BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD07FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1031 0.0
>3x_Contig1758
Length = 25930
Score = 1031 bits (520), Expect = 0.0
Identities = 640/668 (95%), Gaps = 9/668 (1%)
Strand = Plus / Minus
Query: 88 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 11906
Query: 148 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11905 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 11846
Query: 208 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11845 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 11786
Query: 268 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11785 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 11726
Query: 328 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11725 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 11666
Query: 388 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11665 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 11606
Query: 448 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11605 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 11546
Query: 508 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11545 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 11486
Query: 568 agtttgcactttaacggcttccaaaatttcaccctctcccccggtttttggatccaagag 627
|||| |||| || ||||| |||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 11485 agttggcac-ttcacggc-tccaaaatttcaacctct-ccccggttattggatccaagat 11429
Query: 628 ggcgattttgaggacattctt-cttatcgttggaccccttacctttgtacttaagcagag 686
||||| | |||||||| |||| ||||||||| || ||| || | |||||| || |||||
Sbjct: 11428 ggcga-tatgaggacaatcttccttatcgtt-gaacccataacgttgtacataggcagat 11371
Query: 687 gctagccttggatcatattggatattgcagaaatatgaaaattttgttttaagaaagaat 746
||||| |||| ||||||| ||||||||||||||||| ||||||||||||| | ||| ||
Sbjct: 11370 gctagtcttgattcatatt-gatattgcagaaatatg-aaattttgttttatg-aaggat 11314
Query: 747 tttatacc 754
||||||||
Sbjct: 11313 tttatacc 11306
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5844
Number of Sequences: 1807
Number of extensions: 5844
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)