BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 1140 0.0
>3x_Contig1638
Length = 14042
Score = 1140 bits (575), Expect = 0.0
Identities = 642/659 (97%), Gaps = 4/659 (0%)
Strand = Plus / Plus
Query: 47 ctctatccttccatttgctagacgccaaactctgatagaaattattcggtagcttatcta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11169 ctctatccttccatttgctagacgccaaactctgatagaaattattcggtagcttatcta 11228
Query: 107 atatagtttgtacggggaacatatcatatggatcgattgattggttatccagagcagcgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11229 atatagtttgtacggggaacatatcatatggatcgattgattggttatccagagcagcgg 11288
Query: 167 cagactggccgttattacctgccattgctagatctccgtcatgatccatagggtaaatca 226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11289 cagactggccgttattacctgccattgctagatctccgtcatgatcca-agggtaaatca 11347
Query: 227 gttgaattgttatcactctgagccgggactgcccatataaactgagacggtgttgaagaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11348 gttgaattgttatcactctgagccgggactgcccatataaactgagacggtgttgaagaa 11407
Query: 287 ggcggtatagtgccctggtacgattcaaacagtttatccaggtccttctgttgtatgggc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11408 ggcggtatagtgccctggtacgattcaaacagtttatccaggtccttctgttgtatgggc 11467
Query: 347 ttcaacttccccaatagaagctcttgaagtacaggtttattaaaccatgtatatagttgt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11468 ttcaacttccccaatagaagctcttgaagtacaggtttattaaaccatgtatatagttgt 11527
Query: 407 aaaatcaactgcattgactcattcctcacagatttatccgcatgtgagcaaagtttaggt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11528 aaaatcaactgcattgactcattcctcacagatttatccgcatgtgagcaaagtttaggt 11587
Query: 467 aaaacttccactagaccctgtaacgattgcatcttctcctgttgagaaacgttcacgaac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11588 aaaacttccactagaccctgtaacgattgcatcttctcctgttgagaaacgttcacgaac 11647
Query: 527 ccaaactgctctatcaactttacatgaaccattaacgctgcagtcaacagctttcgtaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11648 ccaaactgctctatcaactttacatgaaccattaacgctgcagtcaacagcttcggtaat 11707
Query: 587 ttttttgtccaaattggcgtcagacaattgattgcttttacgattttatcattcaatgac 646
||||| |||||||| |||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct: 11708 tttttggtccaaatcggcgtcagacaattgattgcatttacgatattatcatccaatgac 11767
Query: 647 accacaagcgaaaacgccagccaatggaaccctctttcgttcctgattttcgaggaagt 705
|| ||||||| |||||| |||||| ||| |||||||||| |||| ||||||||||||
Sbjct: 11768 acgacaagcg-aaacgcaggccaat-gaagcctctttcgtcgctga-tttcgaggaagt 11823
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6456
Number of Sequences: 1807
Number of extensions: 6456
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)