BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD08FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig639 1168 0.0
>3x_Contig639
Length = 2382
Score = 1168 bits (589), Expect = 0.0
Identities = 679/700 (97%), Gaps = 7/700 (1%)
Strand = Plus / Plus
Query: 85 ctggaaacagaagctttgttcgctagagcagtttgggcacgggctaatctgaacattgcg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctggaaacagaagctttgttcgctagagcagtttgggcacgggctaatctgaacattgcg 168
Query: 145 tgtgttgtatgttgtgttgttggtgggggagaaaagcgaaagagaggaagaaaaaccaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgtgttgtatgttgtgttgttggtgggggagaaaagcgaaagagaggaagaaaaaccaat 228
Query: 205 tgatcccatatacatatgataaaaaattgtcaattgaaaaacgactcctttttataattt 264
|||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgatcccagagaca-atgataaaaaattgtcaattgaaaaacgactcctttttataattt 287
Query: 265 aacaggtcatatcacagcgcagtccagtgctaagaatttccctcaccaagttaaaccaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aacaggtcatatcacagcgcagtccagtgctaagaatttccctcaccaagttaaaccaga 347
Query: 325 aagacggactagttcgagaaggccaacaagggcaatggcaacatcattggaaaaagtgat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aagacggactagttcgagaaggccaacaagggcaatggcaacatcattggaaaaagtgat 407
Query: 385 aaattgtgataagtagtgatgcttgatccattagaagagagaaaaaaaaaaaaaatgtgc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaattgtgataagtagtgatgcttgatccattagaagagagaaaaaaaaaaaaaatgtgc 467
Query: 445 tgcggctgctacagtggagaggcctgaccatgccgagatttgggaaacttaagagacctg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgcggctgctacagtggagaggcctgaccatgccgagatttgggaaacttaagagacctg 527
Query: 505 ggatactggttcgtttagtggaaggcacagcacacacctctcactccggttcttgctgga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 528 ggatactggttcgtttagtggaaggcacagcacacacctctcactccggttctcgctgga 587
Query: 565 cctggacttggacttggacctggnacctgggcagatgcagatgcagagctccagccctgc 624
||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||
Sbjct: 588 cctggacttggacttggacctggacctggggcagaggcagaggcagagctccagccctgc 647
Query: 625 tggagctctccccattgctccacaccctgtgtcctgtaaactccgacttctggggaaaag 684
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tggagctctcccaattgctccacaccctgtgtcctgtaaactccgacttctggggaaaag 707
Query: 685 gatttt-acacaaagaatgcgaatgcacacttgcaaattgacccaaagtattccaaattt 743
|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct: 708 gattttaacacaaagaatgcgaatgcacac-tgcaaattgacccaaagtatctcaaa-tt 765
Query: 744 gatgcccggttggcatcaatttaacggaaggtcgcttttt 783
|||| || |||| |||||| ||||||| ||||||||||||
Sbjct: 766 gatg-ccagttgacatcaa-ttaacgg-aggtcgcttttt 802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,604
Number of Sequences: 1807
Number of extensions: 14604
Number of successful extensions: 372
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)