BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD08RM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig692 702 0.0
>3x_Contig692
Length = 2077
Score = 702 bits (354), Expect = 0.0
Identities = 378/382 (98%), Gaps = 3/382 (0%)
Strand = Plus / Minus
Query: 51 acggtggtatgcgtggtat-aagggtcttgtttgggaaggttccgttttggacccagaag 109
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 acggtggtatgcgtggtatcaagggtcttgtttgggaaggttccgttttggacccagaag 2003
Query: 110 aaggtattagattcagaggtcgtaccattccagatatccaaaaggaattgccaaaggcag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 aaggtattagattcagaggtcgtaccattccagatatccaaaaggaattgccaaaggcag 1943
Query: 170 ccgatggtgaagaaccattgccagaagctatcttttggttgcttttgaccggtgaagttc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 ccgatggtgaagaaccattgccagaagctatcttttggttgcttttgaccggtgaagttc 1883
Query: 230 caactgaaactcaagttaaggctttgtcagcagatttggcttctagatctgagttgccag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 caactgaaactcaagttaaggctttgtcagcagatttggcttctagatctgagttgccag 1823
Query: 290 ctcatgttgagtctctattggataacttaccaaaggatttgcatccaatggctcaattct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 ctcatgttgagtctctattggataacttaccaaaggatttgcatccaatggctcaattct 1763
Query: 350 cgatggcagttactgcattggaatcagaatccaaatttgccaaagcttacgctcaaaggt 409
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 1762 cgatggcagttactgcattggaatcagaatccaaatttgccaaggcttacgctc-aaggt 1704
Query: 410 gttttctaagaaggattactgg 431
| ||||||||||||||||||||
Sbjct: 1703 g-tttctaagaaggattactgg 1683
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,105
Number of Sequences: 1807
Number of extensions: 21105
Number of successful extensions: 1243
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)