BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD09FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig801 1057 0.0
>3x_Contig801
Length = 2608
Score = 1057 bits (533), Expect = 0.0
Identities = 660/685 (96%), Gaps = 13/685 (1%)
Strand = Plus / Plus
Query: 85 ccattgcctatgtgctccgccacatggttggctgaatacttcatattgttgggattcgtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ccattgcctatgtgctccgccacatggttggctgaatacttcatattgttgggattcgtt 990
Query: 145 ataaatatggaacaagttagacttaaatccgtagacgaagaaatcatcatttgaatcata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ataaatatggaacaagttagacttaaatccgtagacgaagaaatcatcatttgaatcata 1050
Query: 205 aaatgaaccttccaaaaaacctcggctaattttattggcgtgtattgttttgtacacaga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 aaatgaaccttccaaaaaacctcggctaattttattggcgtgtattgttttgtacacaga 1110
Query: 265 gcttctgaagtctacagcaacaaagaaataagttccatctctgttagtcattgagaataa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 gcttctgaagtctacagcaacaaagaaataagttccatctctgttagtcattgagaataa 1170
Query: 325 tgcatcattctctgtggtttccaaatagttaatagaagttattgcatcagctgcttgagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 tgcatcattctctgtggtttccaaatagttaatagaagttattgcatcagctgcttgagt 1230
Query: 385 tttaaccacaattggaggtttcgtttctgatgcaaggtcgaagataaatgccaagctgaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 tttaaccacaattggaggtttcgtttctgatgcaaggtcgaagataaatgccaagctgaa 1290
Query: 445 tcttgcacccaccagtaagcgattattatgaacttctgcgcaacttgatatcatgttttc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 tcttgcacccaccagtaagcgattattatgaacttctgcgcaacttgatatcatgttttc 1350
Query: 505 aggtttagaatacgtatacctttctgttggagcacaggaaccatggttgaatttttacat 564
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1351 aggtttagaaaacgtatacctttctgttggagcacaggaaccatggttgaattttaacat 1410
Query: 565 tcacagtgggtctctagga-tcggcgattc-attat-aggtag-aatgagcagtgtgtc- 619
||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||
Sbjct: 1411 caacagtgggtctctaggattcggcgattcaattataaggtagaaatgagcagtgtgtct 1470
Query: 620 tactgat-agcagtttaccgttttattaag-agttcta-ttcatagtcgactttttgc-a 675
||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
Sbjct: 1471 tactgataagcagtttaccgttttagtaagaagttctagttcatagtcgactttttgcaa 1530
Query: 676 cacagaatccgatttatcaaattt-aacgatgtc-ataagcatttg-tggtca-ggagaa 731
||||||| | ||||||||||||| ||||||||| ||||||||||| || ||| | ||||
Sbjct: 1531 cacagaaccgaatttatcaaatttaaacgatgtcaataagcatttgttgttcatgaagaa 1590
Query: 732 gaaggtgttttcgtttcctggggta 756
|| |||||||||||||||| |||||
Sbjct: 1591 gatggtgttttcgtttccttgggta 1615
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6601
Number of Sequences: 1807
Number of extensions: 6601
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)