BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZD09RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1698                                                        1150   0.0  

>3x_Contig1698 
          Length = 21001

 Score = 1150 bits (580), Expect = 0.0
 Identities = 649/663 (97%), Gaps = 7/663 (1%)
 Strand = Plus / Plus

                                                                         
Query: 43    gcttaaccatccagttccgacctataattagatgcgaattcctagattccagaagggctg 102
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18409 gcttaaccatccagttccgacctaaaattagatgcgaattcctagattccagaagggctg 18468

                                                                         
Query: 103   tccatttatcttgagcccagacggcccatgctaatcgccttcgtagtccacgttcccagc 162
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18469 tccatttatcttgagcccagacggcccatgctaatcgccttcgtagtccacgttcccagc 18528

                                                                         
Query: 163   gaggtaatctccagtcttgacaatcaacaccgaggccaagttcctctgacaaagcaacaa 222
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18529 gaggtaatctccagtcttgacaatcaacaccgaggccaagttcctctgacaaagcaacaa 18588

                                                                         
Query: 223   cttccgaacatagtacccaattgttgggacattcactacgacaatgcaaaattagtaaac 282
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18589 cttccgaacatagtacccaattgttgggacattcactacgacaatgcaaaattagtaaac 18648

                                                                         
Query: 283   ctgcttggacaatgcttaatttgggtctttcaaacacctcgtagaaagtttttaatgcaa 342
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18649 ctgcttggacaatgcttaatttgggtctttcaaacacctcgtagaaagtttttaatgcaa 18708

                                                                         
Query: 343   tatcattcaattgattcgcaacatctggtttaggaaaaccaatcaattgcgggtggaaat 402
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18709 tatcattcaattgattcgcaacatctggtttaggaaaaccaatcaattgcgggt-gaaat 18767

                                                                         
Query: 403   cccaccattgtaaagctagggaataaatggatgcaagaattggcgccgtgagttcacgat 462
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18768 cccaccattgtaaagctagggaataaatggatgcaagaattggcgccgtgagttcacgat 18827

                                                                         
Query: 463   aagatcttgagtacttctccaaaaatactcgttcgtgtagaatgggaaagtaaggatgaa 522
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18828 aagatcttgagtacttctccaaaaatactcgttcgtgtagaatgggaaagtaaggatgaa 18887

                                                                         
Query: 523   tcagtttaaagatnattttcaccaatattttaccatgaggatgcactagtttttccacta 582
             ||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 18888 tcagtttaaagaaaatttcaaccaatattttaccatgaggatgcactagtttttccacta 18947

                                                                         
Query: 583   aatctatatcacgttcttgcttcaagt-aagttcttga-taaaatcgtctctt-agatga 639
             ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 18948 aatctatatcacgttcttgcttcaagtaaagttcttgattaaaatcgtctcttaagatga 19007

                                                                         
Query: 640   actgtgcatt-ggagattcctggcgta-tgcgacattttttgataattgcac-tgctcaa 696
             |||||||||| |||||| ||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 19008 actgtgcattgggagataccttgcgtagtgcgacattttttgataattgcacttgctcaa 19067

                
Query: 697   tct 699
             |||
Sbjct: 19068 tct 19070


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5686
Number of Sequences: 1807
Number of extensions: 5686
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)