BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD10FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1533 1368 0.0
>3x_Contig1533
Length = 11082
Score = 1368 bits (690), Expect = 0.0
Identities = 746/760 (98%), Gaps = 4/760 (0%)
Strand = Plus / Plus
Query: 85 cagaagacaattgttccaattcattggaaactaagtggacacacaatgggaattcatcga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2076 cagaagacaattgttccaattcattggaaactaagtggacacacaatgggaattcatcga 2135
Query: 145 cagtggccttcttcttacccaaatcataaattctgatcttagagtctggaacagctctgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 cagtggccttcttcttacccaaatcataaattctgatcttagagtctggaacagctctgt 2195
Query: 205 tgtatctagactttgtgtaaggcttgttcttttggtatctgtaacatctagctggtcttc 264
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 tgtatctagactttgggtaaggcttgttcttttggtatctgtaacatctagctggtcttc 2255
Query: 265 tagccattttgaattactttggacggtgataggtgatcggtgttcctgtaaataataaac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 tagccattttgaattactttggacggtgataggtgatcggtgttcctgtaaataataaac 2315
Query: 325 aaaattgaagcgaatgatcaaaccttatgttaaagatatcgataattatcattaaattat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 aaaattgaagcgaatgatcaaaccttatgttaaagatatcgataattatcattaaattat 2375
Query: 385 gttctctttttattacatttgaaaatctcgatgattaccaccaactattgcaggaagctt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 gttctctttttattacatttgaaaatctcgatgattaccaccaactattgcaggaagctt 2435
Query: 445 ttgcatttgtcagaaacttgaaaaagattggaaagtcgtagcgaagtcacacggtaagaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 ttgcatttgtcagaaacttgaaaaagattggaaagtcgtagcgaagtcacacggtaagaa 2495
Query: 505 actactgtgaaaacaaatcaaagaaaatagttactaatcacgtgctctatttcctattgn 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 actactgtgaaaacaaatcaaagaaaatagttactaatcacgtgctctatttcctattgt 2555
Query: 565 ggttgtttttgtatcataaaaatatgttgaatgccaatatgtaatagtgtctgggtgttg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 ggttgtttttgtatcataaaaatatgttgaatgccaatatgtaatagtgtctgggtgttg 2615
Query: 625 gggatagcagtcccagatgcgttgttatgcacgtgatgctgattgaaatttcatttcttt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 gggatagcagtcccagatgcgttgttatgcacgtgatgctgattgaaatttcatttcttt 2675
Query: 685 t-caagtcgatgagatgagatgagatgagacgagacatgatattgcagaaaattttatgt 743
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 tccaagtcgatgagatgagatgagatgagacgagacatgatattgcagaaaattttatgt 2735
Query: 744 actcggtgtttctacgataaa-ccaagtgcgaattaaagagtccanacacacatcattga 802
||||||||||||||||||||| ||||||||||| || ||| || ||||||||||||||
Sbjct: 2736 actcggtgtttctacgataaagccaagtgcgaagaaagaagtacaaacacacatcattga 2795
Query: 803 attttttttctctatgagacttagaatactcattggtttt 842
| | | |||||||||||||||||| |||||||||||||||
Sbjct: 2796 a-tctctttctctatgagacttag-atactcattggtttt 2833
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9861
Number of Sequences: 1807
Number of extensions: 9861
Number of successful extensions: 528
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)