BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD10RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1334 0.0
>3x_Contig1572
Length = 12810
Score = 1334 bits (673), Expect = 0.0
Identities = 762/785 (97%), Gaps = 5/785 (0%)
Strand = Plus / Minus
Query: 49 gcgttaagggaacgtccttcccatggtatatatccaattgcgtgacatctatagaaccat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 gcgttaagggaacgtccttcccatggtatatatccaattgcgtgacatctatagaaccat 1877
Query: 109 caacaagtctaggttctaattcgctatcaagcgtgctaaatccagcccagtcagcaccgg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 caacaagtctaggttctaattcgctatcaagcgtgctaaatccagcccagtcagcaccgg 1817
Query: 169 gccttggaagaccaaacgtgttgattttgtcttctggaatacctccagttggagcaaatt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 gccttggaagaccaaacgtgttgattttgtcttctggaatacctccagttggagcaaatt 1757
Query: 229 cattcattaagatcaccgtgttggaatggtttcgttgctttataacccaggttttgtcct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1756 cattcattaagatcaccgtgttggaatggtttcgttgctttataacccaggttttgtcct 1697
Query: 289 cagagcacagaacaacgtttcctgcgtcatcggataatgctttgaattttaccggtcctg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 cagagcacagaacaacgtttcctgcgtcatcggataatgctttgaattttaccggtcctg 1637
Query: 349 tttgaaatgcatcaagcagatcatctgaaagctgtaataacttataacctgtttccggtt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 tttgaaatgcatcaagcagatcatctgaaagctgtaataacttataacctgtttccggtt 1577
Query: 409 ctaatttattgtatagattaacgctcatacttctgaaaacgatttaagcagaatggattt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 ctaatttattgtatagattaacgctcatacttctgaaaacgatttaagcagaatggattt 1517
Query: 469 ccgtggccgctactatacaatgatatcttaagtttccaatttctgagaagtagagatttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 ccgtggccgctactatacaatgatatcttaagtttccaatttctgagaagtagagatttt 1457
Query: 529 gcctcttgctgttttatttcttctctgtagcatggatcatacaatcaactaacgcccttt 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1456 gcctcttgctgttttatttcttctctgtagcatggatcatacaatcaactaacgccattt 1397
Query: 589 tttctttatgaagccccgaaattatttttcgagatacgtagaaaatacataaatatcttg 648
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1396 tttctttatgaag-cccgaaatta-ttttcgagatacgtagaaaatacataaatatcttg 1339
Query: 649 acgaggaacccatttgttctgaactgactacggaatcagtaagtagtgtatggtattgga 708
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 1338 acgaggaacccatttgttctgacctgactacggaatcagtaagtagtgtgtggta-tgga 1280
Query: 709 gtttccac-ttcttttttgcagaataatggcatgttacagacttttaccacttacctttc 767
|||||||| |||||| | |||||||||||||||||||||||| ||||||| ||| | |
Sbjct: 1279 gtttccacattctttatgcaagaataatggcatgttacagacttctaccactcaccatac 1220
Query: 768 gcgttaatcatttatttttgcattgattcctttaactatttacct-ttcagatctaggtt 826
|||||||||||| | || |||| |||| |||||||||||||||| ||||||||||||||
Sbjct: 1219 gcgttaatcattactcttcgcatcgatttctttaactatttacctattcagatctaggtt 1160
Query: 827 ggttt 831
||||
Sbjct: 1159 tgttt 1155
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6625
Number of Sequences: 1807
Number of extensions: 6625
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)