BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC32ZD11FM1.SCF screened BAC_end (866 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig275 254 3e-67 >3x_Contig275 Length = 1611 Score = 254 bits (128), Expect = 3e-67 Identities = 206/227 (90%), Gaps = 4/227 (1%) Strand = Plus / Plus Query: 233 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 505 Query: 293 agtanggaaagaatcattgcagaattggggtttacgaaagtataaatgaaatatcttgga 352 |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct: 506 agtagggaaagaatcattgcagaattgggg-ttacgaagtaataaatgaaatatcttgga 564 Query: 353 tcaagacaaacccattaggaagaaacattggggacaggttgaactgccccattgtttgaa 412 |||||||||||| ||||||||| |||| | | ||||||| |||||| |||||| ||||| Sbjct: 565 tcaagacaaaccaattaggaag-aacaattgtgacaggtagaactg-gccattggttgaa 622 Query: 413 ccacgttaaaaagcatttacttggcgggggccaaaggcaatccggaa 459 |||| |||| |||||||||| | | |||| |||||||||||||||| Sbjct: 623 ccacagtaaagagcatttactcgtc-ggggtcaaaggcaatccggaa 668 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 22,701 Number of Sequences: 1807 Number of extensions: 22701 Number of successful extensions: 443 Number of sequences better than 1.0e-20: 1 length of query: 866 length of database: 10,358,551 effective HSP length: 16 effective length of query: 850 effective length of database: 10,329,639 effective search space: 8780193150 effective search space used: 8780193150 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)