BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZD11FM1.SCF screened BAC_end
         (866 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig275                                                          254   3e-67

>3x_Contig275 
          Length = 1611

 Score =  254 bits (128), Expect = 3e-67
 Identities = 206/227 (90%), Gaps = 4/227 (1%)
 Strand = Plus / Plus

                                                                       
Query: 233 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttgatctcttgcaggaagaaggtttattgttcttgtgggtaaccggccgtgctatcga 505

                                                                       
Query: 293 agtanggaaagaatcattgcagaattggggtttacgaaagtataaatgaaatatcttgga 352
           |||| ||||||||||||||||||||||||| |||||||   |||||||||||||||||||
Sbjct: 506 agtagggaaagaatcattgcagaattgggg-ttacgaagtaataaatgaaatatcttgga 564

                                                                       
Query: 353 tcaagacaaacccattaggaagaaacattggggacaggttgaactgccccattgtttgaa 412
           |||||||||||| ||||||||| |||| | | ||||||| ||||||  |||||| |||||
Sbjct: 565 tcaagacaaaccaattaggaag-aacaattgtgacaggtagaactg-gccattggttgaa 622

                                                          
Query: 413 ccacgttaaaaagcatttacttggcgggggccaaaggcaatccggaa 459
           ||||  |||| |||||||||| | | |||| ||||||||||||||||
Sbjct: 623 ccacagtaaagagcatttactcgtc-ggggtcaaaggcaatccggaa 668


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,701
Number of Sequences: 1807
Number of extensions: 22701
Number of successful extensions: 443
Number of sequences better than 1.0e-20: 1
length of query: 866
length of database: 10,358,551
effective HSP length: 16
effective length of query: 850
effective length of database: 10,329,639
effective search space: 8780193150
effective search space used: 8780193150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)