BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD12FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1356 1213 0.0
>3x_Contig1356
Length = 8043
Score = 1213 bits (612), Expect = 0.0
Identities = 691/713 (96%), Gaps = 4/713 (0%)
Strand = Plus / Plus
Query: 98 tccactgtgagagtactaactctcgcactgattccatcgaattgcagattgggaaccaga 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4833 tccactgtgagagtactaactctcgcactgattccatcgaattgcagattgggaaccaga 4892
Query: 158 ttcctcgattttccagtgctaaagaaaatcagtggaattggtcgcctagatgttttcctt 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 ttcctcgattttccagtgctaaagaaaatcagtggaattggtcgcctagatgttttcctt 4952
Query: 218 tttcggacgatttttttataagatatggatggtaagaaaacaacaaagtgcggtgtacat 277
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 tttcggacgaaaaacttaaaagatatggatggtaagaaaacaacaaagtgcggtgtacat 5012
Query: 278 atagtaataggatttaaacgcatttttatatgtggtgtattgtggtaacagtcccttatt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 atagtaataggatttaaacgcatttttatatgtggtgtattgtggtaacagtcccttatt 5072
Query: 338 ttcattttgagtctcaccacttactaattttttcgcaccgaacttacaatctgtaggcag 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5073 ttcattttgagtctcaccacttactaattttttcgcaccgaacttacaatctgtaggcag 5132
Query: 398 actcgccaatttcctcctacgctccggttccactccctccctgttctccaccctgttggg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5133 actcgccaatttcctcctacgctccggttccactccctccctgttctccaccctgttggg 5192
Query: 458 tacacggagtgcaagcttactggcctgcctaccggtagcaaagcttcctgcctaacctta 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5193 tacacggagtgcaagcttactggcctgcctaccggtagcaaagcttcctgcctaacctta 5252
Query: 518 ccgtctcccccgtccaacccatgcttccagctgggaatagggcccatcttctcctccgct 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5253 ccgtctcccccgtccaacccatgcttccagctgggaatagggcccatcttctcctccgct 5312
Query: 578 attgtctctgcgaacagcttggttccctagtatgggtcctaccattg-atgattnntttg 636
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 5313 attgtctctgcgaacagcttggttccctagtatgggtcctaccattgaatgatttttttg 5372
Query: 637 gtgaacttttcag-atcattgcgaagttttgagatatcgacctttttcaccaatacgaac 695
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5373 gtgaacttttcagaatcattgcgaagtttgaggatatcgacctttttcaccaatacgaac 5432
Query: 696 aatctcagtttggaattaattgctttttttgatagttacagcttttgttgatttcacatt 755
||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 5433 aatctcagttt-gaatttaatgctttttttgatagttacagcttttgttgatttcacata 5491
Query: 756 nagattttagttgatattgcaattcatttaaccgtattcttttattaatagaa 808
|||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct: 5492 gagattttagttgatattgcaattcatttca-cgtattctttttataatagaa 5543
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6555
Number of Sequences: 1807
Number of extensions: 6555
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)