BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZD12RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1142 0.0
>3x_Contig1630
Length = 14771
Score = 1142 bits (576), Expect = 0.0
Identities = 652/675 (96%), Gaps = 2/675 (0%)
Strand = Plus / Minus
Query: 42 aagcttgtagagtgagattaaccaatggtaacattgtttctgcatatatcccaggcgaag 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5371 aagcttgtagagtgagattaaccaatggtaacattgtttctgcatatatcccaggcgaag 5312
Query: 102 gccataacgcacaagagcacagtattgtatatgttcgtggaggccgttgccaagatttac 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5311 gccataacgcacaagagcacagtattgtatatgttcgtggaggccgttgccaagatttac 5252
Query: 162 ctggtgtgaaatatcatgttgtccgtggtgccggtgatttggccggtgttgtcaacagaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5251 ctggtgtgaaatatcatgttgtccgtggtgccggtgatttggccggtgttgtcaacagaa 5192
Query: 222 tcagctccagatcgaagtacggtgtgaagaaaccaacaaaggagtaagataccaacagta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5191 tcagctccagatcgaagtacggtgtgaagaaaccaacaaaggagtaagataccaacagta 5132
Query: 282 ttatattctgaattatcaacataaaatatatacttatgtttataaactagaccttcatgt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5131 ttatattctgaattatcaacataaaatatatacttatgtttataaactagaccttcatgt 5072
Query: 342 aaatatgcgaataatctatctactggttgctcaatctttatggccacgtgaccgaaattt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5071 aaatatgcgaataatctatctactggttgctcaatctttatggccacgtgaccgaaattt 5012
Query: 402 tgttcggatggtttttccatcatagaaaagtgctgaaaatttagttaacaacgatttcaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5011 tgttcggatggtttttccatcatagaaaagtgctgaaaatttagttaacaacgatttcaa 4952
Query: 462 cgaaaaggtgcccctattggaacaaacagaaagatagattcatcatctgncaggaattgg 521
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 4951 cgaaaaggtgcccctattggaacaaacagaaagaaagattcatcatctgcaaggaattgg 4892
Query: 522 gaaatttcgaagagactaaacctgctcagtgttgaggaaactttacagttgatattgttc 581
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4891 gaaatttcgaagagactaaacctgctcagtgttgaggaaacttacaagttgatattgttc 4832
Query: 582 caagtcaattgaag-aaagctcatagacttgttcgaaaaatatgcct-gggtgaacactt 639
|||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 4831 caagtcaattgaagaaaagctcatagacttgttcgaaaaaaaagcctggggtgaacactt 4772
Query: 640 gtgagcctttctatattcatacataataatgtttcacctttaacattacatcctatggtt 699
||||||||| |||| ||||||||||||||| |||||| ||| |||| ||||| | |
Sbjct: 4771 gtgagccttctaatatcaatacataataatgttacaccttaaaccatacaacctattggt 4712
Query: 700 ccaatagacattaac 714
|||| ||||||||||
Sbjct: 4711 ccaaaagacattaac 4697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8067
Number of Sequences: 1807
Number of extensions: 8067
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)