BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE02FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig546 819 0.0
3x_Contig723 765 0.0
>3x_Contig546
Length = 1666
Score = 819 bits (413), Expect = 0.0
Identities = 440/447 (98%), Gaps = 2/447 (0%)
Strand = Plus / Plus
Query: 467 gttcgataacgctggtgctatgatgtctgttgatgaaagtttattatgttcgttccaaat 526
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gttcgataacgctggtgctatgatgtctgttgatgaaagtttatgatgttcgttccaaat 60
Query: 527 cttgaaaccagcttctaagttattggaacgaaacgtagt-gag-aagaaagaaatgatga 584
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 61 cttgaaaccagcttctaagttattggaacgaaacgtagtagagcaagaaagaaatgatga 120
Query: 585 atttaaatttaaaccttcttaatcatcatcatcatcatcatcatcatcatcatcctcatc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttaaatttaaaccttcttaatcatcatcatcatcatcatcatcatcatcatcctcatc 180
Query: 645 tctcccccccctttaaacaacgaatcccatctcaaagaaaatccccaatgaaaaaaccag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctcccccccctttaaacaacgaatcccatctcaaagaaaatccccaatgaaaaaaccag 240
Query: 705 ataaaaataaactattaaattcaaacataaagtataagatatattactggaaaaacttgc 764
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaaaaataaactattaaattcaaacataaagtataagatatattactggaaaaacttgc 300
Query: 765 tgagctagaacgttttcctttatacctttctaatatattgnaacataatttctttgtcga 824
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 301 tgagctagaacgttttcctttatacctttctaatatattgtaacataatttctttgtcga 360
Query: 825 atgtcaagcgggctgctacaatttcaattncatacctttatctccactttactctcttat 884
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 361 atgtcaagcgggctgctacaatttcaatttcaaacctttatctccactttactctcttat 420
Query: 885 cacccttttacacatatcccatcattc 911
|||||||||||||||||||||||||||
Sbjct: 421 cacccttttacacatatcccatcattc 447
>3x_Contig723
Length = 3342
Score = 765 bits (386), Expect = 0.0
Identities = 393/394 (99%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 87 tggaaaacttttacggattgtttcaactgtttgcctatcgctgcgattgtcgatgaaaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2950 tggaaaacttttacggattgtttcaactgtttgcctatcgctgcgattgtcgatgaaaaa 3009
Query: 147 atcttttgtatgcatggtggattatccccagatttaaataccatggaacaaatcagacgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3010 atcttttgtatgcatggtggattatccccagatttaaataccatggaacaaatcagacgt 3069
Query: 207 gtgatgagacccaccgatatcccagacgtggggttattatgcgatttgttatggtccgat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3070 gtgatgagacccaccgatatcccagacgtggggttattatgcgatttgttatggtccgat 3129
Query: 267 ccggataaagatatcgttggatggtcagaaaacgatagaggtgtctcgttcacttttggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3130 ccggataaagatatcgttggatggtcagaaaacgatagaggtgtctcgttcacttttggt 3189
Query: 327 cctgacgtagtgagtaggtttttacaaaaacaagatatggaattgatctgtagagcacat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3190 cctgacgtagtgagtaggtttttacaaaaacaagatatggaattgatctgtagagcacat 3249
Query: 387 caagtcgtcgaagacggatacgagtttttcagtaaaagacaattggtaacattgttcagt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3250 caagtcgtcgaagacggatacgagtttttcagtaaaagacaattggtaacattgttcagt 3309
Query: 447 gctccaaactactgtggtgagttcgataacgctg 480
|||||||||||||| |||||||||||||||||||
Sbjct: 3310 gctccaaactactg-ggtgagttcgataacgctg 3342
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9501
Number of Sequences: 1807
Number of extensions: 9501
Number of successful extensions: 723
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)