BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE02RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1671 0.0
>3x_Contig1319
Length = 7600
Score = 1671 bits (843), Expect = 0.0
Identities = 869/875 (99%), Gaps = 2/875 (0%)
Strand = Plus / Minus
Query: 45 gctttaagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 gctttaagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggta 1491
Query: 105 aaatgcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 aaatgcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataa 1431
Query: 165 acgttatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagcca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 acgttatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagcca 1371
Query: 225 catgctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 catgctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatg 1311
Query: 285 acccaaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 acccaaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttac 1251
Query: 345 aaaggaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 aaaggaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccc 1191
Query: 405 tgcgatatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 tgcgatatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaat 1131
Query: 465 caaatgatgatttagggataaacgaaatagacactgcatcggaaagtgaagacaatgaca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 caaatgatgatttagggataaacgaaatagacactgcatcggaaagtgaagacaatgaca 1071
Query: 525 atatgaacaacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 atatgaacaacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgag 1011
Query: 585 taggaaaaaaatacattaatgacgggagaactgatggtgaaatgatgcccgacaactcag 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 taggaaaaaaatacattaatgacgggagaactgatggtgaaatgatgcccgacaactcag 951
Query: 645 atctctgggaaactgaagatgagtcggatattgacacaactaatgacgttaatggattgg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 atctctgggaaactgaagatgagtcggatattgacacaactaatgacgttaatggattgg 891
Query: 705 accaaatatacgctgaaaatatatcagtttttgaggaagatactgggagtgatagttata 764
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 890 accaaatatacgctgaaaatatatcagtttttgaggaggatactgggagtgatagttata 831
Query: 765 atgatggtcaaattcaaccggtgcaaatatctatgaatgactttgctgatagtgaaagta 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 atgatggtcaaattcaaccggtgcaaatatctatgaatgactttgctgatagtgaaagta 771
Query: 825 cgcctactaaaaagccacgcactatgccgacaaagatcgattaggaa-gattgaaatact 883
|||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 770 cgcctactaaaaagccacgcactaagccgacaaagatcgataaggaaggattgaaatact 711
Query: 884 tgagag-tttggaaagctttcataggattggtgta 917
|||||| ||||||| ||||||||||||||||||||
Sbjct: 710 tgagagttttggaaggctttcataggattggtgta 676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7388
Number of Sequences: 1807
Number of extensions: 7388
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)