BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE03FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1524 0.0
>3x_Contig1296
Length = 7334
Score = 1524 bits (769), Expect = 0.0
Identities = 801/809 (99%), Gaps = 2/809 (0%)
Strand = Plus / Minus
Query: 88 atcactgatcttggaggtccaagcgttgacacatcaaactctgtacgtaagaaccaagaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 atcactgatcttggaggtccaagcgttgacacatcaaactctgtacgtaagaaccaagaa 2303
Query: 148 aagaccagcatccccttatattttgggtaggcatagttaacaatttgttacactcatagc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2302 aagaccagcatccccttatattttgggtaggcatagttaacaatttgttacactcatagc 2243
Query: 208 acatacgtttcattcacagaaaacctagtttaatctccacacaaaaatacctagcaaaca 267
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2242 acatacgtttcaatcacagaaaacctagtttaatctccacacaaaaatacctagcaaaca 2183
Query: 268 ttcacagagacatgaatggttttaattgtaccacaactcggaagtgtactggcaacacaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182 ttcacagagacatgaatggttttaattgtaccacaactcggaagtgtactggcaacacaa 2123
Query: 328 atatataactcagacgtacgttctttcaaatttaaatatttatcctgtcttattctttag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2122 atatataactcagacgtacgttctttcaaatttaaatatttatcctgtcttattctttag 2063
Query: 388 ttggacagaatgagaaataattgtggaacggggcagaagagtgtgtggtatgaatttgtt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 ttggacagaatgagaaataattgtggaacggggcagaagagtgtgtggtatgaatttgtt 2003
Query: 448 tcaaaaaactcgataccatccgagaatattatttactattcggacctcaacagctcaagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2002 tcaaaaaactcgataccatccgagaatattatttactattcggacctcaacagctcaggt 1943
Query: 508 tcggagttccggcgtccacctggtgcagtaactgtctgtgatactcaaaactgagaaaat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tcggagttccggcgtccacctggtgcagtaactgtctgtgatactcaaaactgagaaaat 1883
Query: 568 accgagaaacgaacatcgaggttcgtaggaaaagcatcgatcggcacatgaaaaacatgc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1882 accgagaaacgaacatcgaggttcgtaggaaaagcatcgatcggcacatgaaaaacatgc 1823
Query: 628 ttttgcgtattggaaatcggagcttgacattgtggaaacctagtatctatatcggaagaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 ttttgcgtattggaaatcggagcttgacattgtggaaacctagtatctatatcggaagaa 1763
Query: 688 aatccagtttttattttacacctggtttgaatacctttgttccactgtgattagactttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 aatccagtttttattttacacctggtttgaatacctttgttccactgtgattagactttt 1703
Query: 748 cacctccgacgtaatgccatcaccgctatttccagtcacgtaattgaagaagtactaatg 807
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1702 cacctccgacgtaatgccatcaccgctatttccagtcacgtaattgaagaggtactaatg 1643
Query: 808 agattccaccgtcttttcctttttgtttctgtttcacagctgatatcac-atgcgagttt 866
|||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct: 1642 agattcca-cgtcttttccttttgttttctgtttcacagctgagatcacaatgcgagttt 1584
Query: 867 cgcattggtgatctatattcccagttttt 895
|||||||||||||||||||||||||||||
Sbjct: 1583 cgcattggtgatctatattcccagttttt 1555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6116
Number of Sequences: 1807
Number of extensions: 6116
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)