BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE03RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1275 1130 0.0
>3x_Contig1275
Length = 5476
Score = 1130 bits (570), Expect = 0.0
Identities = 721/749 (96%), Gaps = 17/749 (2%)
Strand = Plus / Minus
Query: 66 tttcccat-agagagat-atggtttgttgctacaactacatcaccgctgacagcgaggga 123
|||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 5476 tttcccatcagagagatcatggtttgt-gctacaactacatcaccgctgacagcgagg-a 5419
Query: 124 aggctcatccgaattaaaatctgcatgaagttcgtatgcattttccttcgatgacgaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5418 aggctcatccgaattaaaatctgcatgaagttcgtatgcattttccttcgatgacgaaga 5359
Query: 184 tatt-acagaagggcttccttggtacccagagttcaaaaggtcattttcgttattcggat 242
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 5358 tattcacagaagggcttccttg-tacccagagttcaaaaggtcattttcgttattcg-at 5301
Query: 243 accccatttgcccagtttcagatatatcaggcactgaagtcacagatgggtggtatggta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5300 accccatttgcccagtttcagatatatcaggcactgaagtcacagatgggtggtatggta 5241
Query: 303 tctgatctgacgcagtagcagaattgtgaggaatatttaacgtaatgtctgtattggaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 tctgatctgacgcagtagcagaattgtgaggaatatttaacgtaatgtctgtattggaaa 5181
Query: 363 ttgatagctgaatgtttgattgttgcagttcatttttcgattcattttcattaacttcaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 ttgatagctgaatgtttgattgttgcagttcatttttcgattcattttcattaacttcaa 5121
Query: 423 tggataactcatctgcttgcagatcaaatgctttcttcatcagtaaagtggaggattttt 482
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 5120 tggataactcatctgcttgcagatc-aaggctttcttcatcagtaaagtggaggattttt 5062
Query: 483 tgagtttcagcgttaattttntgctcaactgctaactcttccagctccacagttcgatgc 542
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 tgagtttcagcgttaattttttgctcaactgctaactcttccagctccacagttcgatgc 5002
Query: 543 actggttcaggcgattctctgaacgaaacttcaggttcagtagtaatctttttcaatttc 602
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5001 actggttcaggcgattctctgaacgaaacttcaggttcagtagtaatc-ttttcaatttc 4943
Query: 603 actattattaatatcttccggtattatttcttctatttcgatgtaacttgtggtgcgaac 662
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 4942 actattattaatatcttcggttattatttcttctatttcgatgtaacttgtggtgcgaac 4883
Query: 663 gcgtacccgcatgtcagctggtttcattacattaagctcggct-attcctcttgccgtc- 720
||||||||||||||||||||||| ||||||| || |||||||| |||||||||| ||||
Sbjct: 4882 gcgtacccgcatgtcagctggttccattacaataggctcggctaattcctcttg-cgtcg 4824
Query: 721 gatcctccatttaggattctacgtacttacttaattccaatagatcttcttggcttggtg 780
||||||||||| ||||||||||||||| ||| |||| || |||||| ||||||||| |||
Sbjct: 4823 gatcctccattaaggattctacgtactcactcaatt-cagtagatc-tcttggctt-gtg 4767
Query: 781 cagtaatcttcgaaggggagatgcagctt 809
|||| ||||||||| ||||||||||||||
Sbjct: 4766 cagt-atcttcgaa-gggagatgcagctt 4740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7039
Number of Sequences: 1807
Number of extensions: 7039
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)