BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE04RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1396 0.0
>3x_Contig1741
Length = 21706
Score = 1396 bits (704), Expect = 0.0
Identities = 817/842 (97%), Gaps = 10/842 (1%)
Strand = Plus / Minus
Query: 49 tcgagaacaccaaaccacatcctaggttaaagagaaatttaaacgatcagacaaaccaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6533 tcgagaacaccaaaccacatcctaggttaaagagaaatttaaacgatcagacaaaccaag 6474
Query: 109 atctaataagagtctttcatttggagaaaggaagatagcatcatcccaaaattaataaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6473 atctaataagagtctttcatttggagaaaggaagatagcatcatcccaaaattaataaaa 6414
Query: 169 ggtaaaagcaaaaaagcatcttcatactgtatcattatttttttgttcttcattcaacca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6413 ggtaaaagcaaaaaagcatcttcatactgtatcattatttttttgttcttcattcaacca 6354
Query: 229 ttgtatttttatttatatcgtgtctcattgaaatagacagtcggacttctaatcaaattg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6353 ttgtatttttatttatatcgtgtctcattgaaatagacagtcggacttctaatcaaattg 6294
Query: 289 ctaacaatatatcaggcataatctgtggaatgaaactcacttatttggacaatggacaat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6293 ctaacaatatatcaggcataatctgtggaatgaaactcacttatttggacaatggacaat 6234
Query: 349 agaccccttttgaaactcggtgttttctgattcatatcccctcatgaacatctttcatct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6233 agaccccttttgaaactcggtgttttctgattcatatcccctcatgaacatctttcatct 6174
Query: 409 gaaataatatgttggtaccattatgactttcctctcacaataagctattcgcccattatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6173 gaaataatatgttggtaccattatgactttcctctcacaataagctattcgcccattatg 6114
Query: 469 caacgggtttaaccttaatcctgtttaattaaagacgcaactctatatccgatcttccag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6113 caacgggtttaaccttaatcctgtttaattaaagacgcaactctatatccgatcttccag 6054
Query: 529 gcggaatgtggaaaacatcattntatttcattg-aataatcaaccactatattttgnatt 587
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||
Sbjct: 6053 gcggaatgtggaaaacatcattttatttcattgtaataatcaaccactatattttgtatt 5994
Query: 588 atgtat-attccaaaaacaaacattaact-attaaacttcaattaccagtttcattagat 645
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 5993 atgtataattccaaaaacaaacattaactaattaaacttcaattaccagttccattagat 5934
Query: 646 taagctttgttagtagctgaaatcaatcttgtcttattttcattacacctgttctgctga 705
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5933 t-agctttgttagtagctgaaatcaatcttgtcttatttccattacacctgttctgctga 5875
Query: 706 tttgaaagtttcttttattacatgctccattttgggcaagaatttcaacctgtaaaaaaa 765
||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5874 tttgaaagtttctttaaatacatgctccattttgggcaggaatttcaacctgtaaaaaaa 5815
Query: 766 ccatttg-agagccccacccagatcaggacacttcctgattcaga-aaacagaatttcat 823
||||||| |||||| ||| ||||||| |||||||||||| ||||| |||||||| |||||
Sbjct: 5814 ccatttgaagagccacacacagatcaagacacttcctga-tcagagaaacagaa-ttcat 5757
Query: 824 tcatttaactccattatcgatagggtccccggagacctgctttattttcagtcctacaat 883
|||| |||||||| |||||||| ||| ||||||||||||| |||| |||||| |||||||
Sbjct: 5756 tcatataactccaatatcgata-ggtacccggagacctgc-ttatattcagtactacaat 5699
Query: 884 tt 885
||
Sbjct: 5698 tt 5697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8001
Number of Sequences: 1807
Number of extensions: 8001
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)