BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE05FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 1542 0.0
>3x_Contig1361
Length = 8765
Score = 1542 bits (778), Expect = 0.0
Identities = 803/812 (98%)
Strand = Plus / Plus
Query: 86 acgtttcattacggtgactacgaacaattagatatggatcaattaatgtcgaatcaatta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389 acgtttcattacggtgactacgaacaattagatatggatcaattaatgtcgaatcaatta 4448
Query: 146 taccatgccaattcatatatttacagaaaggcaataataagaaaacactacttatctcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 taccatgccaattcatatatttacagaaaggcaataataagaaaacactacttatctcat 4508
Query: 206 acaattcattcatatgtggttaaaaatagagaatcgatcttgaatagggcatttttagaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 acaattcattcatatgtggttaaaaatagagaatcgatcttgaatagggcatttttagaa 4568
Query: 266 tcatttaacatagatgttgattacgcagagttcttggacgatgcacttgatgaaaactgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 tcatttaacatagatgttgattacgcagagttcttggacgatgcacttgatgaaaactgg 4628
Query: 326 gaattaaggcaagagcttgaatcaaaagagaaatggtggatcttgaagcctagtatgagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4629 gaattaaggcaagagcttgaatcaaaagagaaatggtggatcttgaagcctagtatgagt 4688
Query: 386 gataagggtcaaggtatccgcatattcaaaactattgaacaattacaagctatttttgac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4689 gataagggtcaaggtatccgcatattcaaaactattgaacaattacaagctatttttgac 4748
Query: 446 tcgtttgaagaagatgaaactgatgatgaggacactgagacgaatactaataaagtggcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4749 tcgtttgaagaagatgaaactgatgatgaggacactgagacgaatactaataaagtggcc 4808
Query: 506 acttctcaattacgccatttcatcgtccaagaatacttacacaatcctcttttattgagt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4809 acttctcaattacgccatttcatcgtccaagaatacttacacaatcctcttttattgagt 4868
Query: 566 gaagcacatggcaggaaatttcatatcagatgttatgttacctgcagtggcgatctacag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4869 gaagcacatggcaggaaatttcatatcagatgttatgttacctgcagtggcgatctacag 4928
Query: 626 gtgtttgtttatgatagaatgctagcacttttcgctcccaacaaatttgtaccacctacc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4929 gtgtttgtttatgatagaatgctagcacttttcgctcccaacaaatttgtaccacctacc 4988
Query: 686 gaagaatatgacgttttagatattgagcaattagcttgtcatttgactaatacttgcttt 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4989 gaagaatatgacgttttagatattgagcaattagcttgtcatttgactaatacttgcttg 5048
Query: 746 gcaacggatgatgatattaaatcaaattctgtgatcgagtttgatgccttgaaggatatt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5049 caaacggatgatgatattaaatcaaattctgtgatcgagtttgatgccttgaaggatatt 5108
Query: 806 tcttcgcatagaagggaagaaattangactcaaattcacgaagcagttnctgaactgttc 865
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 5109 ccttcgcatagaagggaagaaattaggactcaaattcacgaagcagtttctgaactgttc 5168
Query: 866 aaagctgcagttaaatgtgatcgcctaaattt 897
|||||||||||||| |||||||||||||||
Sbjct: 5169 aaagctgcagttaatgttgatcgcctaaattt 5200
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6739
Number of Sequences: 1807
Number of extensions: 6739
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)