BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE05RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1358 0.0
>3x_Contig1761
Length = 23186
Score = 1358 bits (685), Expect = 0.0
Identities = 756/771 (98%), Gaps = 7/771 (0%)
Strand = Plus / Minus
Query: 47 aaacgtctttcc-attccttttt-aattcc-atgcctt-aacatgttgatcttgattctg 102
|||||||||||| |||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct: 10068 aaacgtctttcccattcctttttcaattcccatgccttcaacatgttgatcttgattctg 10009
Query: 103 ttaaagaagatttcggccagagataacccgagtatgacagcaaacacgtatgcaagtacg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10008 ttaaagaagatttcggccagagataacccgagtatgacagcaaacacgtatgcaagtacg 9949
Query: 163 aatgtcatagcaacaagcatcaacatatatattatcatggtagaacaaaaagtgatcaat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9948 aatgtcatagcaacaagcatcaacatatatattatcatggtagaacaaaaagtgatcaat 9889
Query: 223 aaccgtacaaaatcatggaagaaatcaacccagtctggggcgaaaacgttgaacatgaat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9888 aaccgtacaaaatcatggaagaaatcaacccagtctggggcgaaaacgttgaacatgaat 9829
Query: 283 ttgccgaaactagttggcaagaattgcctttgtaattccagatcttcgatagtatataac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9828 ttgccgaaactagttggcaagaattgcctttgtaattccagatcttcgatagtatataac 9769
Query: 343 acgttcttacctgtagcctcatcgttctcagcttcctcattgactcctgccttcttgaac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9768 acgttcttacctgtagcctcatcgttctcagcttcctcattgactcctgccttcttgaac 9709
Query: 403 catttcaattctaggtaccagctcacaaataacaagaatttgtatacaaaggcagcaaca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9708 catttcaattctaggtaccagctcacaaataacaagaatttgtatacaaaggcagcaaca 9649
Query: 463 acgataagcaagaagataccaaatgcttcaccgcgatcagaagcatagagtttctcaaag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9648 acgataagcaagaagataccaaatgcttcaccgcgatcagaagcatagagtttctcaaag 9589
Query: 523 acaacgggatagttcatatattttcttgtgagataagagttcattccagtcatttcggaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9588 acaacgggatagttcatatattttcttgtgagataagagttcattccagtcatttcggaa 9529
Query: 583 ccaccatccatgtccattccagacatagaactggaagtactagtactcatggccatggca 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9528 ccaccatccatgtccattccagacatagaactggaagtactagtactcatggccatggca 9469
Query: 643 ctggctgaggtggtagtatcacctgcgtgcatattcatnngtgaaaggctttattgatat 702
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9468 ctggctgaggtggtagtatcacctgcgtgcatattcatgt-tgaaaggctttattgatat 9410
Query: 703 ctgtcgatggagtttttggatagtgtcagttgaggctcctttgattatcccaagcc-act 761
|||||||||| |||||||||||||||| |||| ||||| |||||||| |||||||| |||
Sbjct: 9409 ctgtcgatggggtttttggatagtgtcggttgtggctcttttgattaacccaagccaact 9350
Query: 762 gtgcagttattcttttctttgtcaatcgctt-ccaatacgtgaatgaacaa 811
||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 9349 gtgcagttattcttttcttcgtcaatcgcttcccaatacgtgaatgaacaa 9299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6568
Number of Sequences: 1807
Number of extensions: 6568
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)