BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZE07FM1.SCF screened BAC_end
         (918 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig146                                                         1302   0.0  

>3x_Contig146 
          Length = 1181

 Score = 1302 bits (657), Expect = 0.0
 Identities = 710/721 (98%), Gaps = 5/721 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   ttgaatgaattgagatggaaaaactacgaagaatctggatccatcagcagtgaaggttcc 146
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 1025 ttgaatgaattgagatggaaaaattacgaagaatctggatccatcagcagtgaaggtccc 966

                                                                        
Query: 147  atattagaacccatcttctacaaatacctactaagcttttgtgagaatacgggtgatgta 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  atattagaacccatcttctacaaatacctactaagcttttgtgagaatacgggtgatgta 906

                                                                        
Query: 207  gtaaaacaaggttgcgaaaggatcatcatccatgaaacttgggaacccatggacaaagaa 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  gtaaaacaaggttgcgaaaggatcatcatccatgaaacttgggaacccatggacaaagaa 846

                                                                        
Query: 267  gctgatcaatggtatagtaggtc-tgcatatgatatttctcgactcatctcagatacgtt 325
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 845  gctgatcaatggtatagtaggtcctgcatatgatatttctcgactcatctcagatacgtt 786

                                                                        
Query: 326  aagactagtggaacaacttcaatggaatgatctggcccagttgggtactgcctactctgt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  aagactagtggaacaacttcaatggaatgatctggcccagttgggtactgcctactctgt 726

                                                                        
Query: 386  agttttgggaaagatcagtgaatgtgttctccattacgcaagatgtatggaagatatagt 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  agttttgggaaagatcagtgaatgtgttctccattacgcaagatgtatggaagatatagt 666

                                                                        
Query: 446  gagagaagatctatgcataagcgaaaatgatgaacaaaatggtcaaggccaaggcatggg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  gagagaagatctatgcataagcgaaaatgatgaacaaaatggtcaaggccaaggcatggg 606

                                                                        
Query: 506  acacagactgggcaacgatgtatctatcttcaaggacatgaaatcagcgatccaatcttc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  acacagactgggcaacgatgtatctatcttcaaggacatgaaatcagcgatccaatcttc 546

                                                                        
Query: 566  caagttgtggaacaaccaatggaaacaacaattgcaaggcaagagaagacgttcaaatgt 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  caagttgtggaacaaccaatggaaacaacaattgcaaggcaagagaagacgttcaaatgt 486

                                                                        
Query: 626  tgatgctgttgatgctgcctcagctgcctcagcttcagataccgaatctgcaacaacaac 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485  tgatgctgttgatgctgcctcagctgcctcagcttcagataccgaatctgcaacaacaac 426

                                                                        
Query: 686  gactatcagc-actgctgctactggatatgtgatctcgatgagaagctgtgtttgtttaa 744
            ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425  gacta-cagcaactgctgctactggatatgtgatctcgatgagaagctgtgtttgtttaa 367

                                                                        
Query: 745  ac-acatggcattgattttg-acatgattgatgaaatagagaaaagtttccatttaaacc 802
            || ||||||||| ||| ||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 366  acaacatggcatcgatattgaacatgattgatgaagtagagaaaagtttccaattaaacc 307

             
Query: 803  a 803
            |
Sbjct: 306  a 306


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6454
Number of Sequences: 1807
Number of extensions: 6454
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)