BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE07RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig189 1320 0.0
>3x_Contig189
Length = 1476
Score = 1320 bits (666), Expect = 0.0
Identities = 715/730 (97%), Gaps = 1/730 (0%)
Strand = Plus / Plus
Query: 44 gcttcctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gcttcctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagag 748
Query: 104 tgtaaaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgtaaaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacc 808
Query: 164 tacaaaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tacaaaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggc 868
Query: 224 tcgttgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgaga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tcgttgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgaga 928
Query: 284 gctaatcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gctaatcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgag 988
Query: 344 taaagtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 taaagtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttca 1048
Query: 404 cacattgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgaga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 cacattgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgaga 1108
Query: 464 cggtgatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 cggtgatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggca 1168
Query: 524 tctgaaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tctgaaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggct 1228
Query: 584 aatagatcataatttatggaacggcattctacaaagttattaacagttctttcttttaat 643
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1229 aatagatcataattcatggaacggcattctacaaggttattaacagttctttcttttaat 1288
Query: 644 attttcctagccattttatggatcaccaattggcaatcaagtctggtcaaagggggatcg 703
|||||||||||||||||||||||||||||||| |||||| ||||| ||||||| | ||||
Sbjct: 1289 attttcctagccattttatggatcaccaattgccaatcaggtctgttcaaaggtgtatcg 1348
Query: 704 tttcttaaatgcaattcattttgtaggtgaagtgaattctaggcctaagaatgacatttt 763
||||||||||||||||||||||||| |||| || ||||||| |||||| ||||||| |
Sbjct: 1349 tttcttaaatgcaattcattttgta-gtgaggtagattctagtgctaagagtgacattct 1407
Query: 764 caagttcccc 773
||||||||||
Sbjct: 1408 caagttcccc 1417
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8288
Number of Sequences: 1807
Number of extensions: 8288
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)