BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZE08FM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1424                                                        1148   0.0  

>3x_Contig1424 
          Length = 9842

 Score = 1148 bits (579), Expect = 0.0
 Identities = 674/702 (96%), Gaps = 3/702 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   cacattatataccgcaacattttgtcattcgtaattatgtaccagtgtgtttcttaataa 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5804 cacattatataccgcaacattttgtcattcgtaattatgtaccagtgtgtttcttaataa 5863

                                                                        
Query: 147  tgaaatagcgtaccaaaatttccacaatggaaatcaaaacgctgatgaatatgattgtaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5864 tgaaatagcgtaccaaaatttccacaatggaaatcaaaacgctgatgaatatgattgtaa 5923

                                                                        
Query: 207  taaaccaccaggtgatacgggccatattccgttcagcaattgaatcgacacatatatcga 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5924 taaaccaccaggtgatacgggccatattccgttcagcaattgaatcgacacatatatcga 5983

                                                                        
Query: 267  aaaactctaaaaatactttacaacgatcgtttaaaacttgaacacgaggatcaatttcta 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5984 aaaactctaaaaatactttacaacgatcgtttaaaacttgaacacgaggatcaatttcta 6043

                                                                        
Query: 327  aatattctctcattgcttgatacaaagagtgcaaacttggttcaaaggaccagaaaaact 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6044 aatattctctcattgcttgatacaaagagtgcaaacttggttcaaaggaccagaaaaact 6103

                                                                        
Query: 387  ctggggtgtcaagtacactggatgataggttaacatcgacgcgtaacttgaatagcttac 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6104 ctggggtgtcaagtacactggatgataggttaacatcgacgcgtaacttgaatagcttac 6163

                                                                        
Query: 447  ctgatttcttcaataattgttcccttttcaaccccaaggtaccatacaaagcaagtcttt 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6164 ctgatttcttcaataattgttcccttttcaaccccaaggtaccatacaaagcaagtcttt 6223

                                                                        
Query: 507  tatgcaatttagagactgaccccgagatcggaactatgcgcgcttcaaatctcgattagt 566
            || |||||||||||||||||||  ||||||||||||||||||||||||||||||||   |
Sbjct: 6224 taggcaatttagagactgacccgaagatcggaactatgcgcgcttcaaatctcgatagtt 6283

                                                                        
Query: 567  tgaccgattgagctatggcattggacattgttaaggctgnttagtggtcttcggacctca 626
            ||||||||||||||||||||| ||||| ||||||||||| | |||||||| |||||||||
Sbjct: 6284 tgaccgattgagctatggcatgggacaatgttaaggctgttaagtggtctccggacctca 6343

                                                                        
Query: 627  aagtcactatgtca-taaaaatacgaggtcttttcgtatccatgtcatattcgaaatgaa 685
            |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 6344 aagtcactatgtcattaaaaatacgaggtctttccgtatccatgtcatattcgaaatgga 6403

                                                                        
Query: 686  acctttaaatctcgatatcttggtcatttaaaggtttcagcaacatgtttcttatagaat 745
            | |||| ||||||||||||||| |||| |||||||||||||| |||| ||||||||  ||
Sbjct: 6404 agctttcaatctcgatatcttgttcatctaaaggtttcagcaccatg-ttcttataagat 6462

                                                      
Query: 746  gaaaaccaaatttcacctaaggatgttttttttttggatttc 787
            |||||| | || |||||| ||||||||||||| ||| |||||
Sbjct: 6463 gaaaacgagatgtcacct-aggatgtttttttcttgaatttc 6503


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8300
Number of Sequences: 1807
Number of extensions: 8300
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)