BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE08RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1255 0.0
>3x_Contig1531
Length = 8774
Score = 1255 bits (633), Expect = 0.0
Identities = 742/770 (96%), Gaps = 7/770 (0%)
Strand = Plus / Minus
Query: 42 gcttagaaagcagcagtctgcataacctcctgtcgtttccaatcaggatcatgagactgc 101
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6465 gcttagaaagcagcagtctgcagaacctcctgtcgtttccaatcaggatcatgagactgc 6406
Query: 102 tatgtcacaatttgcttactctggttatggaaatcaaggaacttcgctgaccactgcttc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6405 tatgtcacaatttgcttactctggttatggaaatcaaggaacttcgctgaccactgcttc 6346
Query: 162 atctgaggcgatggataccatgggttttgtatcagatgacttgaagcaactactttctat 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6345 atctgaggcgatggataccatgggttttgtatcagatgacttgaagcaactactttctat 6286
Query: 222 gacagattcaaacaaaaaagagaacagctctccgcaacttaaccacaaccaacaacaaca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6285 gacagattcaaacaaaaaagagaacagctctccgcaacttaaccacaaccaacaacaaca 6226
Query: 282 acagccactgcctgtttcgaactcaccaagattgagcccatccggaacttaccagcaatc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6225 acagccactgcctgtttcgaactcaccaagattgagcccatccggaacttaccagcaatc 6166
Query: 342 ccctttaccccccaaccaaggactctacggacctatgatggtccctccaccatttttaat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6165 ccctttaccccccaaccaaggactctacggacctatgatggtccctccaccatttttaat 6106
Query: 402 gagcaatgtgccaaaactaggtccacatccctacgctggtattgcaaatggtcctggtat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6105 gagcaatgtgccaaaactaggtccacatccctacgctggtattgcaaatggtcctggtat 6046
Query: 462 gttgcctatgtatgttcctatgaatgctggtcgtccaatcaaccaacctcctgcataccc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6045 gttgcctatgtatgttcctatgaatgctggtcgtccaatcaaccaacctcctgcataccc 5986
Query: 522 tcaagcaatgtacaatgcgactcaccaacaatgtattgcattcccaccgncacaactntt 581
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct: 5985 tcaagcaatgtacaatgcgactcaccaacaaggtattgcattcccaccgcaacaactttt 5926
Query: 582 tc-acatcaacaattacattcat-acagccacacccac-acaagtnccac-agttcagca 637
|| |||||||||||||||||||| ||||||||| |||| |||||| | || |||||||||
Sbjct: 5925 tcaacatcaacaattacattcatcacagccacaaccacaacaagtccaacaagttcagca 5866
Query: 638 acaaaaactgcaatcttcagctccaaataatgcacagattacaaaatcatctgtggagcc 697
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5865 acaaaaactgcaatctccagctccaaataatgcacagattacaaaatcatctgtggagcc 5806
Query: 698 gcaaactgttgtatgtaacccagaac-aaccaaccaa-ctggatttgacaac-aacagaa 754
||||||||||||| ||||| |||||| |||||| ||| ||| || ||||||| ||||||
Sbjct: 5805 gcaaactgttgtaggtaacacagaacaaaccaaacaacctgcatctgacaacaaacagat 5746
Query: 755 tttaaaaacttcccaagaagaaactcgtcaacaacgttctgaaaactctt 804
|| |||| || || |||||||| ||||||||||||||||||| |||||||
Sbjct: 5745 ttcaaaatctcccaaagaagaatctcgtcaacaacgttctgagaactctt 5696
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6808
Number of Sequences: 1807
Number of extensions: 6808
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)