BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE09FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1187 1072 0.0
>3x_Contig1187
Length = 6482
Score = 1072 bits (541), Expect = 0.0
Identities = 633/656 (96%), Gaps = 6/656 (0%)
Strand = Plus / Minus
Query: 87 cgttaggattaaaagaagttgtggtactagtactaacatttcttaaatcaggaaactcaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2204 cgttaggattaaaagaagttgtggtactagtactaacatttcttaaatcaggaaactcaa 2145
Query: 147 tattgttaggtaagacaaaggcttcagaagttcttgtgccattattcaaagtatcgcggt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2144 tattgttaggtaagacaaaggcttcagaagttcttgtgccattattcaaagtatcgcggt 2085
Query: 207 tcgaagtcagcatgtctccattgaatttcttgatgtcggaggagttcataacgattttgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 tcgaagtcagcatgtctccattgaatttcttgatgtcggaggagttcataacgattttgc 2025
Query: 267 tactagaattgaaatatactgaagcatttacgttgattctgaagacgaccttaatcaact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 tactagaattgaaatatactgaagcatttacgttgattctgaagacgaccttaatcaact 1965
Query: 327 ttctcaaaattttcctaatatcctttacaacattccttttgataagttcttttctcgcta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1964 ttctcaaaattttcctaatatcctttacaacattccttttgataagttcttttctcgcta 1905
Query: 387 agttacaggccaactgatggtaaaagatgtaagttgacgctttcgaaaagttctgataaa 446
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1904 agttacaggccaactgatggtaaaagatgtaagttgncgctttcgaaaagttctgataaa 1845
Query: 447 atgatggttggttttgtttgaagaaatggttatgtgaagctttcaaataatagatagtgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1844 atgatggttggttttgtttgaagaaatggttatgtgaagctttcaaataatagatagtgg 1785
Query: 507 agttttttaactccgtccacgttttcatgtcagaactt-atgaat-aaacattctactat 564
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 1784 agttttttaactccgtccacgttttcatgtcagaacttaatgaataaaacattctactat 1725
Query: 565 tcgattgcggtaatgggttatgagc-agtggctgtgagttttttcgacctgcttcttcat 623
|||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 1724 tcgattgcggtaatggtttaggagcaagtggctgtgagtttttcggacctgcttcttcat 1665
Query: 624 ttttttcattggattgcgtaggatttgaatgcctacgggttgatccacccggatattgac 683
|||||||| ||||||||||||||||||||||| ||| || ||||| ||| ||| || |||
Sbjct: 1664 ttttttcagtggattgcgtaggatttgaatgcatactgggtgatcgacctggagatggac 1605
Query: 684 agggttgacttaaggtctgggttttggaccaaaatggggaatttgggtgcttttga 739
||||||||||| |||||| ||||||||||| | |||| | |||||| |||||||||
Sbjct: 1604 agggttgactt-aggtct-ggttttggacc-agatggtgtatttggttgcttttga 1552
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7614
Number of Sequences: 1807
Number of extensions: 7614
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)