BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC32ZE09RM1.SCF screened BAC_end (911 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1717 952 0.0 >3x_Contig1717 Length = 18389 Score = 952 bits (480), Expect = 0.0 Identities = 598/635 (94%), Gaps = 2/635 (0%) Strand = Plus / Minus Query: 45 tggaatagctaatatcaaaagctcatcgaaaataatattgaaataaatatatacatcgtt 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16955 tggaatagctaatatcaaaagctcatcgaaaataatattgaaataaatatatacatcgtt 16896 Query: 105 gaacagagtagtaaaaggacaccgtgaagtattggatagttgtggaagattagctactgt 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16895 gaacagagtagtaaaaggacaccgtgaagtattggatagttgtggaagattagctactgt 16836 Query: 165 tgaagtaagaaacgttaaaataaaatggtgtatcgtgggtttggtttataccaagtttct 224 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 16835 tgaagtaagaaacgttaaaataaaatggtgtatcgtgggtttggtttagaccaagtttct 16776 Query: 225 ccaccagagaataaaccatttgatcaactttcgcctgaagaacaaggtgaaaaaggtgcc 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16775 ccaccagagaataaaccatttgatcaactttcgcctgaagaacaaggtgaaaaaggtgcc 16716 Query: 285 caaatgatggtggagtttatgacttcttgtcctggaaaagctgccatcagtggtgttact 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16715 caaatgatggtggagtttatgacttcttgtcctggaaaagctgccatcagtggtgttact 16656 Query: 345 ggttttgcattatgtggtgttttcggtttatttatggcatcgatggcgtatgacacacct 404 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16655 ggttttgcattaggtggtgttttcggtttatttatggcatcgatggcgtatgacacacct 16596 Query: 405 ctacatacgccagctccaaccaatgctncaagtttaccaaataaagtgaaagagcttgca 464 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 16595 ctacatacgccagctccaaccaatgctccaggtttaccaaataaagtgaaagagcttgca 16536 Query: 465 gatctacggttgaaacagcagattaagatccagtttagtgatatgggaaaaagaatctac 524 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 16535 gatctaccgttgaaacagcagataaagatccagtttagtgatatgggaaaaagatcctac 16476 Query: 525 ttcagtgcaaagaattttcgtttcatccgtatgatttattcaggggtcaaatgtgttggg 584 | ||||||||||||||| ||| |||| |||||||||||||||| ||| |||||| ||| Sbjct: 16475 tccagtgcaaagaatttcggttacatcggtatgatttattcaggtgtcgaatgtg-tggt 16417 Query: 585 ggatttgttaaggccaaataaccatttttttaacggggtatcttgaagtttgtttgaacg 644 ||| | ||||||| |||| ||| || | | |||||| ||| | || || |||||||| | Sbjct: 16416 ggaatcgttaagggcaaagaacgatatatataacggtgtagc-tgcaggttgtttgacag 16358 Query: 645 ggcgtggcttggccttcaagaatggacctcaggca 679 | |||||||||| | ||||| ||||||||||||| Sbjct: 16357 gcggtggcttggcatacaagagtggacctcaggca 16323 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,286 Number of Sequences: 1807 Number of extensions: 13286 Number of successful extensions: 107 Number of sequences better than 1.0e-20: 1 length of query: 911 length of database: 10,358,551 effective HSP length: 16 effective length of query: 895 effective length of database: 10,329,639 effective search space: 9245026905 effective search space used: 9245026905 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)