BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZE09RM1.SCF screened BAC_end
         (911 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1717                                                         952   0.0  

>3x_Contig1717 
          Length = 18389

 Score =  952 bits (480), Expect = 0.0
 Identities = 598/635 (94%), Gaps = 2/635 (0%)
 Strand = Plus / Minus

                                                                         
Query: 45    tggaatagctaatatcaaaagctcatcgaaaataatattgaaataaatatatacatcgtt 104
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16955 tggaatagctaatatcaaaagctcatcgaaaataatattgaaataaatatatacatcgtt 16896

                                                                         
Query: 105   gaacagagtagtaaaaggacaccgtgaagtattggatagttgtggaagattagctactgt 164
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16895 gaacagagtagtaaaaggacaccgtgaagtattggatagttgtggaagattagctactgt 16836

                                                                         
Query: 165   tgaagtaagaaacgttaaaataaaatggtgtatcgtgggtttggtttataccaagtttct 224
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 16835 tgaagtaagaaacgttaaaataaaatggtgtatcgtgggtttggtttagaccaagtttct 16776

                                                                         
Query: 225   ccaccagagaataaaccatttgatcaactttcgcctgaagaacaaggtgaaaaaggtgcc 284
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16775 ccaccagagaataaaccatttgatcaactttcgcctgaagaacaaggtgaaaaaggtgcc 16716

                                                                         
Query: 285   caaatgatggtggagtttatgacttcttgtcctggaaaagctgccatcagtggtgttact 344
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16715 caaatgatggtggagtttatgacttcttgtcctggaaaagctgccatcagtggtgttact 16656

                                                                         
Query: 345   ggttttgcattatgtggtgttttcggtttatttatggcatcgatggcgtatgacacacct 404
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16655 ggttttgcattaggtggtgttttcggtttatttatggcatcgatggcgtatgacacacct 16596

                                                                         
Query: 405   ctacatacgccagctccaaccaatgctncaagtttaccaaataaagtgaaagagcttgca 464
             ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 16595 ctacatacgccagctccaaccaatgctccaggtttaccaaataaagtgaaagagcttgca 16536

                                                                         
Query: 465   gatctacggttgaaacagcagattaagatccagtttagtgatatgggaaaaagaatctac 524
             ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||  ||||
Sbjct: 16535 gatctaccgttgaaacagcagataaagatccagtttagtgatatgggaaaaagatcctac 16476

                                                                         
Query: 525   ttcagtgcaaagaattttcgtttcatccgtatgatttattcaggggtcaaatgtgttggg 584
             | |||||||||||||||  ||| |||| |||||||||||||||| ||| |||||| ||| 
Sbjct: 16475 tccagtgcaaagaatttcggttacatcggtatgatttattcaggtgtcgaatgtg-tggt 16417

                                                                         
Query: 585   ggatttgttaaggccaaataaccatttttttaacggggtatcttgaagtttgtttgaacg 644
             ||| | ||||||| |||| ||| || | | |||||| ||| | || || ||||||||  |
Sbjct: 16416 ggaatcgttaagggcaaagaacgatatatataacggtgtagc-tgcaggttgtttgacag 16358

                                                
Query: 645   ggcgtggcttggccttcaagaatggacctcaggca 679
             |  |||||||||| | ||||| |||||||||||||
Sbjct: 16357 gcggtggcttggcatacaagagtggacctcaggca 16323


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,286
Number of Sequences: 1807
Number of extensions: 13286
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)