BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE10FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1016 1162 0.0
>3x_Contig1016
Length = 4444
Score = 1162 bits (586), Expect = 0.0
Identities = 618/626 (98%), Gaps = 2/626 (0%)
Strand = Plus / Plus
Query: 87 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 2701
Query: 147 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 2761
Query: 207 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 2821
Query: 267 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 2881
Query: 327 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 2941
Query: 387 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgtgggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2942 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgtgggt 3001
Query: 447 gttttgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagctttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 gttttgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagctttt 3061
Query: 507 agttactgaatacagtgaacatcatgcaaaccaggaaatacgcacttaactcgacccgtt 566
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3062 agttactgaatacagtgaacatcatgcaaaccaggaagtacgcacttaactcgacccgtt 3121
Query: 567 gttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3122 gttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttta 3181
Query: 627 gaacctt-ccatatggactacattttttctatgcccaattgaaaaaaggaaaaatttcat 685
||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 3182 gaaccttcccatatggactacattctttctatgcccaattgaaaaattgaaaaatttcat 3241
Query: 686 ttaaaaactat-aacttaccatttga 710
|||||||||| ||||||| ||||||
Sbjct: 3242 ctaaaaactataaacttacaatttga 3267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8321
Number of Sequences: 1807
Number of extensions: 8321
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)