BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE10RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1247 0.0
>3x_Contig1486
Length = 12131
Score = 1247 bits (629), Expect = 0.0
Identities = 686/700 (98%), Gaps = 4/700 (0%)
Strand = Plus / Plus
Query: 49 tcgaagttcaaaacagaagacgtgctatatgtagcagaaaaatggtttctccgtccttta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8915 tcgaagttcaaaacagaagacgtgctatatgtagcagaaaaatggtttctccgtccttta 8974
Query: 109 atgatatcagacacattttaaactctgcccagattttggccttactcaaatcgaaagaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8975 atgatatcagacacattttaaactctgcccagattttggccttactcaaatcgaaagaat 9034
Query: 169 tgaaattggtcacttttgatggtgacgttacgctatatgaggatgggggatccattgaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9035 tgaaattggtcacttttgatggtgacgttacgctatatgaggatgggggatccattgaaa 9094
Query: 229 gaggtggtaaaatcgttacaaggattatcacgttgttgaaacgtgggatcaacgttggtg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9095 gaggtggtaaaatcgttacaaggattatcacgttgttgaaacgtgggatcaacgttggtg 9154
Query: 289 ttgtcactgccgccgggtatgatgacccagataaatacaaggaacgtctgtatggactat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9155 ttgtcactgccgccgggtatgatgacccagataaatacaaggaacgtctgtatggactat 9214
Query: 349 gctttgcgttgttctccgataagtcaatgtcgttggaacagaaatcaaaattgaccgtta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9215 gctttgcgttgttctccgataagtcaatgtcgttggaacagaaatcaaaattgaccgtta 9274
Query: 409 tgggaggtgaatctaactatttgttccagtatttcgagacctcggaacaatttggtttta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275 tgggaggtgaatctaactatttgttccagtatttcgagacctcggaacaatttggtttta 9334
Query: 469 agtccattgatgacgatgaatgggtgccctcaagtgttaaagcttggtctgatgatgata 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9335 agtccattgatgacgatgaatgggtgccctcaagtgttaaagcttggtctgatgatgata 9394
Query: 529 tcgacgctaccttagacgtcgcacagacgtgttttggcgaattaagtcatctgcttgcat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9395 tcgacgctaccttagacgtcgcacagacgtgttttggcgaattaagtcatctgcttgcat 9454
Query: 589 taccatcgaaatgtcaaattatccgcaaaaaaagagcaagttggatttgcccctgggttc 648
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct: 9455 taccatcgaaatgtcaaattatccgcaaaaaaagagc-agttggatttgtccctggtttc 9513
Query: 649 atctttcgatgatgaactagnagttaacgttatagatcaaaatcccaagaaaagcgtttg 708
||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |
Sbjct: 9514 atc-ttcgatgatgaactagaggttaacgtta-agatcaaaatcccaagagaagcgttgg 9571
Query: 709 aagaaatgggtcttgttggttcaaaagaaactaggatcat 748
| ||||||| ||||||| || ||||||||||||| |||||
Sbjct: 9572 aggaaatggttcttgtt-gtacaaaagaaactagaatcat 9610
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7182
Number of Sequences: 1807
Number of extensions: 7182
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)