BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE11FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1425 0.0
>3x_Contig1728
Length = 20685
Score = 1425 bits (719), Expect = 0.0
Identities = 794/812 (97%), Gaps = 6/812 (0%)
Strand = Plus / Minus
Query: 93 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13560 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 13501
Query: 153 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13500 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 13441
Query: 213 ttcatgaacatgtttgacgcaggaaggatttacattgcttatggagttctctgtggtgta 272
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13440 ttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctctgtggtgta 13381
Query: 273 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13380 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 13321
Query: 333 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13320 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 13261
Query: 393 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13260 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 13201
Query: 453 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13200 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 13141
Query: 513 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13140 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 13081
Query: 573 cttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttttgattgag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13080 cttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttttgattgag 13021
Query: 633 atcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctttcttaact 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13020 atcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctttcttaact 12961
Query: 693 gagttagtgacaatgganagttataactacaaggaaagct-aagtcattttggacctacc 751
||||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||
Sbjct: 12960 gagttagtgacaatggaaagtaataactacaagg-aagctaaagtcattttggacctacc 12902
Query: 752 acagtttacgccagctgtctacggtgccattaatcctctgccaatttttagaagc-tgtt 810
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 12901 acagtttacgccagctgtctacggtgccattaatcctctgccaatttttaagagcttgtt 12842
Query: 811 cttcgagtttttacctgataaatncgacttttttgggatcattgnnttgataaggttatg 870
|| |||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||
Sbjct: 12841 ctccgagtttttacctgataaattcgactttttt-gtatcattg-tttgataaggttatg 12784
Query: 871 caaagttctttctcaaatcacaatatcctttg 902
||||| || |||||| ||||| ||||||||||
Sbjct: 12783 caaag-tccttctcagatcaccatatcctttg 12753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6540
Number of Sequences: 1807
Number of extensions: 6540
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)