BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC32ZE11RM1.SCF screened BAC_end (927 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1175 373 e-103 >3x_Contig1175 Length = 4107 Score = 373 bits (188), Expect = e-103 Identities = 220/230 (95%), Gaps = 1/230 (0%) Strand = Plus / Plus Query: 600 ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagatatatatgggagagctgtcagg 659 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1 ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcagg 60 Query: 660 tatgggacgttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcana 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 61 tatgggacgttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcaaa 120 Query: 720 agatagactttttttgggccgtatctgctggtatgatccggcagaattctctttcttagt 779 ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| Sbjct: 121 agatagactttttttgggcggtatcggctggtatgaaccggcagaattctctttcttagt 180 Query: 780 cttaacgtnataagaagtcctgaattgaattcaaactgcccgtccttttt 829 |||||||| ||||| ||||||||||||||||||||| ||||||||||| Sbjct: 181 cttaacgtagtaagagttcctgaattgaattcaaactg-ccgtccttttt 229 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8640 Number of Sequences: 1807 Number of extensions: 8640 Number of successful extensions: 71 Number of sequences better than 1.0e-20: 1 length of query: 927 length of database: 10,358,551 effective HSP length: 16 effective length of query: 911 effective length of database: 10,329,639 effective search space: 9410301129 effective search space used: 9410301129 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)