BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZE12FM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1216                                                        1191   0.0  

>3x_Contig1216 
          Length = 5132

 Score = 1191 bits (601), Expect = 0.0
 Identities = 629/636 (98%), Gaps = 2/636 (0%)
 Strand = Plus / Minus

                                                                        
Query: 85   tcaaagcattcgacgttataattactggtgacgatcccagaattccaaaaggcagaggta 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 tcaaagcattcgacgttataattactggtgacgatcccagaattccaaaaggcagaggta 1356

                                                                        
Query: 145  aaccttttccagatatctggcaactggggttgaaggaattaaatgctaaattcaacacag 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 aaccttttccagatatctggcaactggggttgaaggaattaaatgctaaattcaacacag 1296

                                                                        
Query: 205  atattgagagtaacgaatgtctagtctttgaagatggtattcctggggtcaatgctggaa 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 atattgagagtaacgaatgtctagtctttgaagatggtattcctggggtcaatgctggaa 1236

                                                                        
Query: 265  agagttttggcgcatacgtcatctgggtccctcataaagatgcgattgcgctagtcaaag 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 agagttttggcgcatacgtcatctgggtccctcataaagatgcgattgcgctagtcaaag 1176

                                                                        
Query: 325  accacaaaatattaggcgatagaggtgaaatgctagaatctttagaacactttgaccgtt 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 accacaaaatattaggcgatagaggtgaaatgctagaatctttagaacactttgaccgtt 1116

                                                                        
Query: 385  ccaagtttggattatagttaagtaaaagagagtacatatgtcttaactggatttcagaca 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 ccaagtttggattatagttaagtaaaagagagtacatatgtcttaactggatttcagaca 1056

                                                                        
Query: 445  aaggcatagttaatactcgaagtacttttttgaatagagagattaaataatgtcttctta 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 aaggcatagttaatactcgaagtacttttttgaatagagagattaaataatgtcttctta 996

                                                                        
Query: 505  taagttactacgaacttagttgacttaccgtcatgggatatatgttacatcgacgccttg 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  taagttactacgaacttagttgacttaccgtcatgggatatatgttacatcgacgccttg 936

                                                                        
Query: 565  ttattgcttatagtggnagaatgaaaagagttaacgttcagtgaacgtgagtcaatcggc 624
            ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 935  ttattgcttatagtggaggaatgaaaagagtaaacgttcagtgaacgtgagtcaatcggc 876

                                                                        
Query: 625  aaacaggacagccagttggatgagttaatttaacagtgaatcatcagagagggtagtttc 684
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 875  aaacaggacagccagttggatgagttaatttaacagtgaatcatcagagagggtag-ttc 817

                                                
Query: 685  ttgaacaaatttgaaatacttttaccgcttgtgcaa 720
            |||||||||| ||||||||||| |||| ||||||||
Sbjct: 816  ttgaacaaatatgaaatactttcaccg-ttgtgcaa 782


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8036
Number of Sequences: 1807
Number of extensions: 8036
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)