BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZE12RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1643 827 0.0
>3x_Contig1643
Length = 10865
Score = 827 bits (417), Expect = 0.0
Identities = 459/469 (97%), Gaps = 3/469 (0%)
Strand = Plus / Minus
Query: 48 ctttggaaggcaagacaagatattccaaaaaccataagcaaagaattgactttattatcg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9833 ctttggaaggcaagacaagatattccaaaaaccataagcaaagaattgactttattatcg 9774
Query: 108 gagatgtactctactttgagtgtagaggaacaggattaccaattggatcagtttgtatgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9773 gagatgtactctactttgagtgtagaggaacaggattaccaattggatcagtttgtatgc 9714
Query: 168 tgtgcggaagagtatattgagctggtttatctacctagtttgatcgatgtgttgttcgca 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9713 tgtgcggaagagtatattgagctggtttatctacctagtttgatcgatgtgctgttcgca 9654
Query: 228 aactgcggttcagttgacttttggaaaataatgtttgttcttgaaccgttcttttactat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9653 aactgcggttcagttgacttttggaaaataatgtttgttcttgaaccgttcttttactat 9594
Query: 288 atagaggatttgccggatgagtcaagtagtcttgatatcgaagtcattgatcctgaggat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9593 atagaggatttgccggatgagtcaagtagtcttgatatcgaagtcattgatcctgaggat 9534
Query: 348 ggactagacaaagagcctagaaagcctgatcctcgagtagctactttggaaaaaatctgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9533 ggactagacaaagagcctagaaagcctgatcctcgagtagctactttggaaaaaatctgt 9474
Query: 408 gaagtagcggccaaagagaattggatatgaaaagatattgttcttctacaagtgaattag 467
|||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct: 9473 gaagtagcggccaaggagaattggatatgaaaagatatttttcttctacaggtgaa-tag 9415
Query: 468 gtttatagcattttgttattggatattcatgaatttcaggcactgaaga 516
|||||||||| |||||||||| ||||||||| | |||| ||||||||||
Sbjct: 9414 gtttatagca-tttgttattgtatattcatg-agttcaagcactgaaga 9368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8632
Number of Sequences: 1807
Number of extensions: 8632
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)