BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF01FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1285 1360 0.0
>3x_Contig1285
Length = 6175
Score = 1360 bits (686), Expect = 0.0
Identities = 794/822 (96%), Gaps = 6/822 (0%)
Strand = Plus / Plus
Query: 87 tatgaaagatacgagaaagaactaattcctaggaaaaaaatgaaagcgcaacaaatttgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4753 tatgaaagatacgagaaagaactaattcctaggaaaaaaatgaaagcgcaacaaatttgg 4812
Query: 147 tcagagatacttcaaagtcaaacggagactggagtgccgttcatgctctataaagatgca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4813 tcagagatacttcaaagtcaaacggagactggagtgccgttcatgctctataaagatgca 4872
Query: 207 tgtaataaaaaatctaatcagaaaaatctcggcgttatcaaatcatctaatctttgctgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4873 tgtaataaaaaatctaatcagaaaaatctcggcgttatcaaatcatctaatctttgctgc 4932
Query: 267 gaaattgtcgagtacagctctccagaagaggttgctgtctgtaatctagcatctgttgcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933 gaaattgtcgagtacagctctccagaagaggttgctgtctgtaatctagcatctgttgcc 4992
Query: 327 ttacctacttatgtcaatttgagttccgatggaccgcctgtatttgacttcgtgaaacta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4993 ttacctacttatgtcaatttgagttccgatggaccgcctgtatttgacttcgtgaaacta 5052
Query: 387 catcatgttgttaaggttctcgttaaaaatttagataggactatcgatgtgggaaaatat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5053 catcatgttgttaaggttctcgttaaaaatttagataggactatcgatgtgggaaaatat 5112
Query: 447 cctgttcctgaggctagaaatggaaatataagaaacaggcctttggctattggggttcaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5113 cctgttcctgaggctagaaatggaaatataagaaacaggcctttggctattggggttcaa 5172
Query: 507 gggttggcagacacattcatgctctgccgtactccatttgaatcggttgatgccgcgact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5173 gggttggcagacacattcatgctctgccgtactccatttgaatcggttgatgccgcgact 5232
Query: 567 ttaaacaaacagatttttgaaaccatatatcacgctgctatcgaggcttccacagaacta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5233 ttaaacaaacagatttttgaaaccatatatcacgctgctatcgaggcttccacagaacta 5292
Query: 627 gctgaactatttggtcattatgagaagtttcctgggtctcctgcctcagaa-gccagctt 685
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 5293 gctgaactatttggtcattatgagagttttcctgggtctcctgcctcagaaggccagctt 5352
Query: 686 caatttgatttatggtcattgaacaaagattactacaagtttttatttgatgattggga- 744
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5353 caatttgatttatggtcattgaacaaagataactacaagtttttatttgatgattgggat 5412
Query: 745 tcttttgagtcaaagattaccaaggttaaa-gactgcgt-attctttatttgttgggccc 802
||||| |||||| ||||||||||| |||| |||||||| ||||| |||| ||||| ||
Sbjct: 5413 tctttgaagtcaaggattaccaagggtaaaggactgcgtaattctctattggttggccca 5472
Query: 803 atgccaacggcatttaatttccaga-tttaggattcactggaatctttgaaccctatgac 861
||||||||||||| || || ||||| ||||||||||||| |||||||| | ||||||||
Sbjct: 5473 atgccaacggcatctacttcccagattttaggattcact-gaatcttttgaacctatgac 5531
Query: 862 atcaaatattacctccagaagagtcttggcgggtgaaattac 903
||||||||| |||||||||||||||| |||||||| ||||
Sbjct: 5532 atcaaatatatactccagaagagtcttgtcgggtgaatttac 5573
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6412
Number of Sequences: 1807
Number of extensions: 6412
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)