BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF01RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1626 1239 0.0
>3x_Contig1626
Length = 17698
Score = 1239 bits (625), Expect = 0.0
Identities = 684/697 (98%), Gaps = 5/697 (0%)
Strand = Plus / Plus
Query: 45 gctttttactttgtagccatgacttagagaagaccctgtcagcatatttatgactccgag 104
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6500 gctttttactttgtagccatgacttagagaagaccctgtcagcatatttatgac-ccgag 6558
Query: 105 tcacatagaatggtagccacattgctgccttcaggtagtgtttgtgcaactttagcagca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6559 tcacatagaatggtagccacattgctgccttcaggtagtgtttgtgcaactttagcagca 6618
Query: 165 gcgacaacgtttagtgctgtggtaccaccaacgaaaagaccttcttcatccaatattctg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6619 gcgacaacgtttagtgctgtggtaccaccaacgaaaagaccttcttcatccaatagtctg 6678
Query: 225 aaaagcatgataattgattcttcatctggaataaacacagcatcatcagttatatcgaca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6679 aaaagcatgataattgattcttcatctggaataaacacagcatcatcagttatatcgaca 6738
Query: 285 ctttgtctcatattttcagtgattcttccctggccaataccttcggtgaaggacccacct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6739 ctttgtctcatattttcagtgattcttccctggccaataccttcggtgaaggacccacct 6798
Query: 345 tcccttttcaattcacgggttttgatataagagtaaatgacggatccaggaggatcagct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799 tcccttttcaattcacgggttttgatataagagtaaatgacggatccaggaggatcagct 6858
Query: 405 acgactaatttacagttgccattcgtggcttctttcagaaatttggcaacaccggtatat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6859 acgactaatttacagttgccattcgtggcttctttcagaaatttggcaacaccggtatat 6918
Query: 465 gtaccaccagtaccggtagaacaagtaaaggcatccaacatcatgcctgcttcttctatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6919 gtaccaccagtaccggtagaacaagtaaaggcatccaacatcatgcctgcttcttctatt 6978
Query: 525 tgttgtagaatttcaggagccgtggtgtgataatgggctttccagttcgattgattg-ca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6979 tgttgtagaatttcaggagccgtggtgtgataatgggctttccagttcgattgattgtca 7038
Query: 584 aattgatctgtccatactgcgttatccaatcttttggcgtggtctctagctctattattt 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7039 aattgatctgtccatactgcgttatccaatcttttggcgtggtctctagctctattatta 7098
Query: 644 aagtttaaaggatctgtgatggggcaaacaagaaccagatacactttctgcaccaagcca 703
|||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||
Sbjct: 7099 aagtttaaaggatctgtgatggggcaaacaggaacaggatacac-ttctgcaccaagcca 7157
Query: 704 ttttaattagtttgatctttgctttcagatttggtat 740
||| ||| || ||||||||||| |||||||| |||||
Sbjct: 7158 tttcaataag-ttgatctttgc-ttcagattgggtat 7192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8599
Number of Sequences: 1807
Number of extensions: 8599
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)