BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF03RM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1438 1275 0.0
>3x_Contig1438
Length = 9247
Score = 1275 bits (643), Expect = 0.0
Identities = 711/731 (97%), Gaps = 2/731 (0%)
Strand = Plus / Minus
Query: 64 cattacaatacttcagattaaaaatgtcttttaactcaccatttttggaattcttcgacg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9235 cattacaatacttcagattaaaaatgtcttttaactcaccatttttggaattcttcgacg 9176
Query: 124 ctatcaaccaagaggttgaccaatttaacagattgttgaattcgagtggagttgttgctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9175 ctatcaaccaagaggttgaccaatttaacagattgttgaattcgagtggagttgttgctc 9116
Query: 184 caaagaaaattgaaggtaattatcctgctgattcgagacaggtcgtataacagtccaaga 243
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 9115 caaagaaaattgaaggtaattatcctgctgattcgagacaggtcgcaaaacagtccaaga 9056
Query: 244 acaatagtaactcattatcaaactggttcaaagacccatggtttgctgacctatgtcaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9055 acaatagtaactcattatcaaactggttcaaagacccatggtttgctgacctaggtcaaa 8996
Query: 304 atttgattcctcctttggacatcttggatcatgaaaaggaatacgaagttcatgttagcg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8995 atttgattcctcctttggacatcttggatcatgaaaaggaatacgaagttcatgttagcg 8936
Query: 364 tcccaggcatcaaggaaaagaaagatattaacttagagtaccacaaggatgccaatgaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8935 tcccaggcatcaaggaaaagaaagatattaacttagagtaccacaaggatgccaatgaaa 8876
Query: 424 tcgtcatatcaggtgagatcccagacgtgacaactgaggagaccaaagattctgcaaaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8875 tcgtcatatcaggtgagatcccagacgtgacaactgaggagaccaaagattctgcaaaga 8816
Query: 484 taagagaaagaagatatggtaaatttagcagagttgtcagattaccagattccccatgta 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8815 taagagaaagaagatatggtaaatttagcagagttgtcagattaccagattccccaggta 8756
Query: 544 tcgacgttgaaaacatcaaggcatactacactaacggtgtcttagtcttgaatgttccaa 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8755 tcgacgttgaaaacatcaaggcaaactacactaacggtgtcttagtcttgaatgttccaa 8696
Query: 604 aattgaaacctactgaagaagataaagctaaagtctataagattgaagtttgcgatgaag 663
||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||
Sbjct: 8695 aattgaaacctactgaagaggataaggctaaggtctataagattgaagttggcgatgaag 8636
Query: 664 ctgcttaattgttagttcgttccgatgagatttttgacttatgatgaatgataacaattt 723
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8635 ctgctaaattgtaagttcgttccgatgagatttttgacttatgatgaatgataacaaata 8576
Query: 724 ttttgattacagctttactgaaat-aattcatctaatgattcaagaaatgccattatgtt 782
|| |||| |||||||||||||||| ||| |||||||||||||||||||||| | ||||||
Sbjct: 8575 ttatgataacagctttactgaaataaatacatctaatgattcaagaaatgcgaatatgtt 8516
Query: 783 ggaacgtattt 793
||||||||||
Sbjct: 8515 -gaacgtattt 8506
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9178
Number of Sequences: 1807
Number of extensions: 9178
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)