BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1151 940 0.0
>3x_Contig1151
Length = 5859
Score = 940 bits (474), Expect = 0.0
Identities = 560/586 (95%), Gaps = 2/586 (0%)
Strand = Plus / Plus
Query: 39 agcaattttctttcaaaatgtcatctcaattatcgctctaatcgctacttcaatgtacta 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3455 agcaattttctttcaaaatgtcatctcaattatcgctctaatcgctacttcaatgtacta 3514
Query: 99 ttcgtggtctttaacattgataattttatgcagtttaccactactggcaactctagccgt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3515 ttcgtggtctttaacattgataattttatgcagtttaccactactggcaactctagccgt 3574
Query: 159 tttcctctctatgaaagtggagaaattctcaaaacttgagaacttggaatcttcaaaggc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3575 tttcctctctatgaaagtggagaaattctcaaaacttgagaacttggaatcttcaaaggc 3634
Query: 219 ctcgtcagttttggcatggtctcttgatgcatttcaaatgatacggctattcaacacgtc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3635 ctcgtcagttttggcatggtctcttgatgcatttcaaatgatacggctattcaacacgtc 3694
Query: 279 ttactgggagcagaagaagttcgagacgctagtatccaaatgtaacaaacactttgtcaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3695 ttactgggagcagaagaagttcgagacgctagtatccaaatgtaacaaacactttgtcaa 3754
Query: 339 atcttgcttatactcagctttgaatgcatcgagtttaaggtttctaacactatgcatgtt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3755 atcttgcttatactcagctttgaatgcatcgagtttaaggtttctaacactatgcatgtt 3814
Query: 399 tgtgcaaggtttttggtttggtaatacacaaatcaaacgtgggaagatgaaagctgggga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3815 tgtgcaaggtttttggtttggtaatacacaaatcaaacgtgggaagatgaaagctgggga 3874
Query: 459 tgtaattacatgtttttcctcctggttatttgtggggggcttccttatcaagtaccttgc 518
||||||||||||||||||||| || ||| |||| |||| |||||||||||||||| ||||
Sbjct: 3875 tgtaattacatgtttttcctcttgttta-ttgttggggtcttccttatcaagtacgttgc 3933
Query: 519 agcaaatcgttacaattcaaaaggtaagggcacaatttcaaccttttaaccctgttcctt 578
|||| ||||||||||||||||||| | |||| | | |||| | | || || |||||||
Sbjct: 3934 agcagatcgttacaattcaaaagggtaaggcagcaatacaacgtatcaa-ccagttcctt 3992
Query: 579 gttcccatttttaatttccccgttggggaatgggaaaaaccaagtt 624
||||||| || ||| | | ||||||| ||||||||||||| |||||
Sbjct: 3993 gttcccaattctaagtccgccgttggtgaatgggaaaaacgaagtt 4038
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9605
Number of Sequences: 1807
Number of extensions: 9605
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)