BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF05FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig526 950 0.0
3x_Contig1599 379 e-105
>3x_Contig526
Length = 2622
Score = 950 bits (479), Expect = 0.0
Identities = 486/487 (99%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 86 caaagatctgggcacctttgtaagatgcaagagtagagatacccatctttgacataactt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaagatctgggcacctttgtaagatgcaagagtagagatacccatctttgacataactt 427
Query: 146 tgaagataccaccatcaaccgcgtgtttgtaattatctaataaagtcttatcgtcaattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgaagataccaccatcaaccgcgtgtttgtaattatctaataaagtcttatcgtcaattg 367
Query: 206 atgaatcatcgttgttgacatttcggactaatccttcatgattcattctgaccaaggtct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgaatcatcgttgttgacatttcggactaatccttcatgattcattctgaccaaggtct 307
Query: 266 ccatggctaggtaagggaaaataccatcacaaccataacctaatagaacacagaaatgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccatggctaggtaagggaaaataccatcacaaccataacctaatagaacacagaaatgat 247
Query: 326 gcacctcgcgagcttcaccagtttccaagatcaaagccacctgagaacgctgtttgttgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcacctcgcgagcttcaccagtttccaagatcaaagccacctgagaacgctgtttgttgc 187
Query: 386 gaacaagatggtgatgaatggcaccaatagcgatcaacgaagagattgagacccgatccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gaacaagatggtgatgaatggcaccaatagcgatcaacgaagagattgagacccgatccg 127
Query: 446 cagataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatcactgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cagataacagtctgtcgctaatgaacaaaatcttctttccttgatcaatagcatcactgg 67
Query: 506 cttcctgtgtgattctgtcaatggtagccgtgtagcctaatagaccttcttctttaggga 565
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cttcctgtgt-attctgtcaatggtagccgtgtagcctaatagaccttcttctttaggga 8
Query: 566 aagtaat 572
|||||||
Sbjct: 7 aagtaat 1
>3x_Contig1599
Length = 10178
Score = 379 bits (191), Expect = e-105
Identities = 275/297 (92%), Gaps = 5/297 (1%)
Strand = Plus / Plus
Query: 613 atatttttcaaggcttcaaattcgtcccaatgtaaaattggcgatttttaaactaaacga 672
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 atatttttcaaggcttcaaattcgtcccaatgtaaaattggcgattttaaaactaaacga 60
Query: 673 tcgcattgagaatgatgcatttncaaaaagttccctttgagtcctacgaaacattccaag 732
|||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct: 61 tcgcattgagaaggatgcatttcc-aaaagttcccttgaggtcctacgaaacattccaag 119
Query: 733 gacatgacgttggcctcacgaattggatcatttggagggttttgtcacctgggcgaaaag 792
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 120 gacatgacgttggcctcacgaattggatcaattggaggg-tttgtcacctgggcgaaaag 178
Query: 793 ctctctgaaat-atcatataatagtactgggtcttcatttaaacaggcc-agggagcatc 850
||||||||||| ||||||||||||||||||||||||||||| ||| ||| | ||||||||
Sbjct: 179 ctctctgaaataatcatataatagtactgggtcttcatttagacaagccaatggagcatc 238
Query: 851 attacccatggatcctaaagccttctta-ctnccagcgccatggttacaaggatcat 906
||||||||||||||||| ||| | |||| || | |||||||| | ||||||||||||
Sbjct: 239 attacccatggatcctagagcttccttacctccaagcgccattggtacaaggatcat 295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5797
Number of Sequences: 1807
Number of extensions: 5797
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)