BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF06FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1320 0.0
>3x_Contig1803
Length = 52241
Score = 1320 bits (666), Expect = 0.0
Identities = 837/881 (95%), Gaps = 10/881 (1%)
Strand = Plus / Plus
Query: 89 ctttgtccctcttccagaaatgtccttttatttgagtttgtagatgagcccgggcttcgg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17908 ctttgtccctcttccagaaatgtccttttatttgagtttgtagatgagcccgggcttcgg 17967
Query: 149 agtccaatgacactgaaacgctcgaagaaaccacttaatcttgattatataatcattata 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17968 agtccaatgacactgaaacgctcgaagaaaccacttaatcttgattatataatcattata 18027
Query: 209 cgccaccaactccgttccattctctttccccggtccaccatatacggctgtacactagca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18028 cgccaccaactccgttccattctctttccccggtccaccatatacggctgtacactagca 18087
Query: 269 tgtcgattccccacgcgatcgaccggggaacccgaaatcaatgaagaacgtagaaagtaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18088 tgtcgattccccacgcgatcgaccggggaacccgaaatcaatgaagaacgtagaaagtaa 18147
Query: 329 aatgaaaatcgaaaaaaataaagctacgaaggtttgcaggaagtgagcagatgcccggga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18148 aatgaaaatcgaaaaaaataaagctacgaaggtttgcaggaagtgagcagatgcccggga 18207
Query: 389 atatcacccgtacatcacatttcaatatcaacccgggaagtaaattttgtttttttccag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18208 atatcacccgtacatcacatttcaatatcaacccgggaagtaaattttgtttttttccag 18267
Query: 449 tatcctcttgccccacacgctatctacccataggcatcccgggagcggagcggtacaaca 508
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 18268 tatcctcttgccccacacgctatctacccagaggcatcccgggagcggagcggtacaaca 18327
Query: 509 aattgccaaaatttgtcccccttctcctacttacatcctgtgaaccaaaagaacaacagg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18328 aattgccaaaatttgtcccccttctcctacttacatcctgtgaaccaaaagaacaacagg 18387
Query: 569 ggggaaaggaaaaattttcgagtgccagacatgaacttggctggcaaggtttttcctttc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18388 ggggaaaggaaaaattttcgagtgccagacatgaacttggctggcaaggtttttcctttc 18447
Query: 629 acaccacactcaatggtgaaacgtacatcttttcgaactatttttcgagcatttgggcgt 688
||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 18448 acaccacactcaatgttgaaacgtacatctttcggaactatttttcgagcaattgggcgt 18507
Query: 689 tat-cccaacaatc-aagtactggtctgtacatcccggtcttattgaatacaaaaaa-tt 745
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18508 tattcccaacaatccaagtactggtctgtacatcccggtcttattgaatacaaaaaaatt 18567
Query: 746 taaagaa-gtgccgtatagactgaaa-gtccccaattttttttggtcttgccctgggggg 803
|| |||| |||||||||||||||||| ||||||||||||||||| ||||||| || | |
Sbjct: 18568 tagagaaagtgccgtatagactgaaaagtccccaattttttttgttcttgccttgtgtg- 18626
Query: 804 ttaattagttttaatcaaattcc-cgctgggacaaaca-cgggacggggcaacgaaaaac 861
||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||
Sbjct: 18627 ttaattagttttaatcaaattccacgctgggacaaacaacggaacggacaaacgaaaaac 18686
Query: 862 ttaaaccttggcatttcaggaaatttcaaggacattnatttttgaaacgaacagac-cct 920
|||| | | | ||||||| |||||| ||||||| ||||||||||||||||| | |
Sbjct: 18687 ataaaacatagacattcaggacatttca-ggacattttattttgaaacgaacagacacat 18745
Query: 921 tgttggatttcaaagaaaacgtggttttttcgattccgaac 961
| | ||| ||||||||||||| ||| | ||||| ||||||
Sbjct: 18746 agatagatatcaaagaaaacgtagttatatcgataccgaac 18786
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6955
Number of Sequences: 1807
Number of extensions: 6955
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)