BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF06RM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1017 0.0
>3x_Contig1803
Length = 52241
Score = 1017 bits (513), Expect = 0.0
Identities = 573/585 (97%), Gaps = 6/585 (1%)
Strand = Plus / Plus
Query: 44 cttctttgtccctcttcc-gaaatgtccttttatttgagtttgtagatgagcccgggctt 102
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 17905 cttctttgtccctcttccagaaatgtccttttatttgagtttgtagatgagcccgggctt 17964
Query: 103 cggagtccaatgacactgaaacgctcgaagaaaccacttaatcttgattatataatcatt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17965 cggagtccaatgacactgaaacgctcgaagaaaccacttaatcttgattatataatcatt 18024
Query: 163 atacgccaccaactccgttccattctctttccccggtccaccatatacggctgtacacta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18025 atacgccaccaactccgttccattctctttccccggtccaccatatacggctgtacacta 18084
Query: 223 gcatgtcgattccccacgcgatcgaccggggaacccgaaatcaatgaagaacgtagaaag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18085 gcatgtcgattccccacgcgatcgaccggggaacccgaaatcaatgaagaacgtagaaag 18144
Query: 283 taaaatgaaaatcgaaaaaaataaagctacgaaggtttgcaggaagtgagcagatgcccg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18145 taaaatgaaaatcgaaaaaaataaagctacgaaggtttgcaggaagtgagcagatgcccg 18204
Query: 343 ggaatatcacccgtacatcacatttcaatatcaacccgggaagtaaattttgtttttttc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18205 ggaatatcacccgtacatcacatttcaatatcaacccgggaagtaaattttgtttttttc 18264
Query: 403 cagtatcctcttgccccacacgctatctacccatatgcatcccgggagcggagcggtaca 462
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 18265 cagtatcctcttgccccacacgctatctacccagaggcatcccgggagcggagcggtaca 18324
Query: 463 acaaattgccaaaatttgtcccccttctcctacttacatcctgtgaaccaaaagaatcac 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18325 acaaattgccaaaatttgtcccccttctcctacttacatcctgtgaaccaaaagaacaac 18384
Query: 523 aggggggaaagggaaaatttttcgagtgccagacatgaacttggctggcaaagttttttc 582
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 18385 aggggggaaa-ggaaaaattttcgagtgccagacatgaacttggctggc-aaggtttttc 18442
Query: 583 ctttcacaccacacttcaatgttgaaaacgtacatcctttcggaa 627
|||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct: 18443 ctttcacaccacac-tcaatgttg-aaacgtacat-ctttcggaa 18484
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9108
Number of Sequences: 1807
Number of extensions: 9108
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)