BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF07FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1690 1037 0.0
>3x_Contig1690
Length = 13018
Score = 1037 bits (523), Expect = 0.0
Identities = 596/619 (96%), Gaps = 1/619 (0%)
Strand = Plus / Minus
Query: 86 aacaaaaaatgctggttgtcgaaaaaaaatacaaacaaaccctttgaacattgggaattt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3034 aacaaaaaatgctggttgtcgaaaaaaaatacaaacaaaccctttgaacattgggaattt 2975
Query: 146 ttaatagattgaacccagcacatttgaaggaaagaaaaccttttaaaaagtttacccgga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974 ttaatagattgaacccagcacatttgaaggaaagaaaaccttttaaaaagtttacccgga 2915
Query: 206 aattgaacagtttcttttttcttcccatctggatctggaaagttggaaaatttaagattg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2914 aattgaacagtttcttttttcttcccatctggatctggaaagttggaaaatttaagattg 2855
Query: 266 aacatagtcaaagaagcgatgagatgagatgagatgagatgagatgagatgagttcaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2854 aacatagtcaaagaagcgatgagatgagatgagatgagatgagatgagatgagttcaatg 2795
Query: 326 agctttcacatatataatttcttcaacaccgataagtgctccttttgttttcactgtaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2794 agctttcacatatataatttcttcaacaccgataagtgctccttttgttttcactgtaga 2735
Query: 386 aagagaggttgaaaaggtcttctattcaaatgccggataatcagtttagaatcattgtgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2734 aagagaggttgaaaaggtcttctattcaaatgccggataatcagtttagaatcattgtgg 2675
Query: 446 gttcttacgaacacaatctattatgtttatcttttgacttatcgttaacccaaccgctat 505
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2674 gttcttacgaacacaatctattatgtttatctttgaacttatcgttaacccaaccgctat 2615
Query: 506 tcacgccaatatttcatttttaagcgcactcattgagtgtgaaatgtctagacatatcaa 565
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 tcacgccaatatttcattttcaagcgcactcattgagtgtgaaatgtctagacatatcaa 2555
Query: 566 agagatacctattatcaggattcgacgatgaaaatat-aggatcttccatttaccaaaac 624
||||||||||| ||||||||| ||||||||||||| || |||| | |||||| |||||
Sbjct: 2554 agagatacctagtatcaggatcgaacgatgaaaatataagaatctacgatttacaaaaac 2495
Query: 625 gtataaaattgggaacgttgttaggacattaaggtttcattacgaatttaaaattttaaa 684
||| | ||||||| ||||||||||||||| |||||| |||||||||||| | ||| | ||
Sbjct: 2494 gtaaagaattggggacgttgttaggacatcaaggttccattacgaatttgagattctcaa 2435
Query: 685 aaggtaaaaatgccgatgg 703
||||||| ||||||||||
Sbjct: 2434 gaggtaaagatgccgatgg 2416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,719
Number of Sequences: 1807
Number of extensions: 11719
Number of successful extensions: 1010
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)