BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF07RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig721 856 0.0
>3x_Contig721
Length = 1977
Score = 856 bits (432), Expect = 0.0
Identities = 488/503 (97%), Gaps = 3/503 (0%)
Strand = Plus / Minus
Query: 43 gcttggctaaattgttctcggcttttctggacgccatattgagtttatccatcatctcca 102
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1779 gcttggctaaattgttctcggctagtctggacgccatattgagtttatccatcatctcca 1720
Query: 103 attcagaatcaaggtccgcatctgtctcatcccctccgtgttttctcaatctgtgggcct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 attcagaatcaaggtccgcatctgtctcatcccctccgtgttttctcaatctgtgggcct 1660
Query: 163 tcggcctcccgttttcattactcatttgtgcttcgagagatttcttgttcacagtactac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1659 tcggcctcccgttttcattactcatttgtgcttcgagagatttcttgttcacagtacgac 1600
Query: 223 ggatataaccataaatatacagttcttctcgcacgtcaaaccccaggttcgtaatttgga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 ggatataaccataaatatacagttcttctcgcacgtcaaaccccaggttcgtaatttgga 1540
Query: 283 acagtaaattgatcaattttgcgaattcagaagttttaaggtccgtagtcagacctgctg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 acagtaaattgatcaattttgcgaattcagaagttttaaggtccgtagtcagacctgctg 1480
Query: 343 ctggctttttttatgcagataaagctcaaagcatgtggttcctttgtacaatcttgatat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ctggctttttttatgcagataaagctcaaagcatgtggttcctttgtacaatcttgatat 1420
Query: 403 tcttgttcctcgaattgtcttacttttcagcattttggaacatgaaaaaggaactgaaat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 tcttgttcctcgaattgtcttacttttcagcattttggaacatgaaaaaggaactgaaat 1360
Query: 463 ncaaattattaattccaagtcactggggtgatttgtaaaaggaattttgggactttccga 522
||||| || |||||||||||||| ||||||| ||| ||||| | |||||||| | | ||
Sbjct: 1359 tcaaataataaattccaagtcact-gggtgatatgt-aaaggtaatttgggacatccaga 1302
Query: 523 aattttgaaaggagtaaagctgg 545
|| ||||||||||||||||||||
Sbjct: 1301 aa-tttgaaaggagtaaagctgg 1280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,581
Number of Sequences: 1807
Number of extensions: 15581
Number of successful extensions: 119
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)