BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF10FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1460 1207 0.0
3x_Contig152 299 5e-81
>3x_Contig1460
Length = 9157
Score = 1207 bits (609), Expect = 0.0
Identities = 676/697 (96%), Gaps = 1/697 (0%)
Strand = Plus / Minus
Query: 87 gaatatctctattggacataaatcaagagactttatcggttctaaatcaggacattattg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3274 gaatatctctattggacataaatcaagagactttatcggttctaaatcaggacattattg 3215
Query: 147 ttaatgccagaagttcagaaaatatgaatgaagtgaacttgattctagaaaatttgatac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3214 ttaatgccagaagttcagaaaatatgaatgaagtgaacttgattctagaaaatttgatac 3155
Query: 207 ttgaaaatgaacctagcgtagtgttgtgttcaagcaggttaggggaagtgatttatgaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3154 ttgaaaatgaacctagcgtagtgttgtgttcaagcaggttaggggaagtgatttatgaaa 3095
Query: 267 acctcaaatttttgtcaatcgagcgcagttttagattgcagatgcagtcccatgacaaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3094 acctcaaatttttgtcaatcgagcgcagttttagattgcagatgcagtcccatgacaaat 3035
Query: 327 ttaaagtagaatattttgttcaacattggaacaactttcaagagtcccaacaattgatag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3034 ttaaagtagaatattttgttcaacattggaacaactttcaagagtcccaacaattgatag 2975
Query: 387 atattcaaggatttcagatcttggaccaattgggtacaaacaaagccgctaaagtgacaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974 atattcaaggatttcagatcttggaccaattgggtacaaacaaagccgctaaagtgacaa 2915
Query: 447 ccatgtcattgagctgcttgataaaatctatggatcatttctccgccgttgattttgacg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2914 ccatgtcattgagctgcttgataaaatctatggatcatttctccgccgttgattttgacg 2855
Query: 507 aatgtgagatgtttaattttttcgaaaaggtcaatatagtgagacaattaatgttgaaag 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2854 aatgtgagatgtttaattttttcgaaaaggtcaatatagtgagacaattaatgttgaagg 2795
Query: 567 atcggctctttcttgatgatgatactctggcggctttacatatttttaaacccatccaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2794 atcggctctttcttgatgatgatactctggcggctttacatatttttaaacccatccaga 2735
Query: 627 ttccaggacatttttgtgaaat-acaaaaaccggctattcatctgtgtttgatttgctca 685
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2734 taccaggacatttttgtgaaataacaaaaaccggctattcatctgtgtttgatttgctca 2675
Query: 686 atcacactactttaaaccttggtaaaaaaatgcttaatccctggttagccaagccactat 745
|||||||||||| | | |||||||||| | |||| || |||||||||||| |||||||
Sbjct: 2674 atcacactacttcagaacttggtaaaagattgctaaaatcctggttagccagtccactat 2615
Query: 746 ctattaaattttaattggaggaaagacaaaaggtgat 782
||| |||| | | | | || || ||||||||||||||
Sbjct: 2614 ctaataaaatattaatagaagagagacaaaaggtgat 2578
>3x_Contig152
Length = 823
Score = 299 bits (151), Expect = 5e-81
Identities = 154/155 (99%)
Strand = Plus / Minus
Query: 341 tttgttcaacattggaacaactttcaagagtcccaacaattgatagatattcaaggattt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tttgttcaacattggaacaactttcaagagtcccaacaattgatagatattcaaggattt 760
Query: 401 cagatcttggaccaattgggtacaaacaaagccgctaaagtgacaaccatgtcattgagc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cagatcttggaccaattgggtacaaacaaagccgctaaagtgacaaccatgtcattgagc 700
Query: 461 tgcttgataaaatctatggatcatttctccgccgt 495
|||||||||||||||||||||||||||||| ||||
Sbjct: 699 tgcttgataaaatctatggatcatttctcccccgt 665
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8983
Number of Sequences: 1807
Number of extensions: 8983
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)