BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF10RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1618 1070 0.0
>3x_Contig1618
Length = 12146
Score = 1070 bits (540), Expect = 0.0
Identities = 601/616 (97%), Gaps = 4/616 (0%)
Strand = Plus / Minus
Query: 43 gctttctatgagcaattagtggtattcagtgtagagttatcctttcgtatgaccaataac 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9660 gctttctatgagcaattagtggtattcagtgtagagttatcctttcgtatgaccaataac 9601
Query: 103 tatatacgtttagaccaagagggaagtagtgtaattaagggattgatgccagggtctata 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9600 tatatacgtttagaccaagagggaagtagtgtaattaagggattgatgccagggtctata 9541
Query: 163 tcttcgtcatcaaagaaaaaagttcaagagtcagaagagatagtcatatcttctgatgat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9540 tcttcgtcatcaaagaaaaaagttcaagagtcagaagagatagtcatatcttctgatgat 9481
Query: 223 aacagcagttatttcaacaactctacgtcgagaaaacttcagaatcgtcatgtgcaactt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480 aacagcagttatttcaacaactctacgtcgagaaaacttcagaatcgtcatgtgcaactt 9421
Query: 283 ataggtatatcaggtgtcattgggacagcgttgtttgtcagtatcggtaaggcgttatac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420 ataggtatatcaggtgtcattgggacagcgttgtttgtcagtatcggtaaggcgttatac 9361
Query: 343 cgtggtggaccggtatcgttaattcttggattttcgttatggtgtattccgattctctgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9360 cgtggtggaccggtatcgttaattcttggattttcgttatggtgtattccgattctctgt 9301
Query: 403 attacagtcagcacagcagagatggtttgttatttaccaatctcttctccgttcttgagg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300 attacagtcagcacagcagagatggtttgttatttaccaatctcttctccgttcttgagg 9241
Query: 463 atggccaagagatgttgcaatgattcgttagctgttactgcggggtggaatttcttggtt 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9240 atggccaagagatgttgcaatgattcgttagctgttactgcggggtggaatttc-tggtt 9182
Query: 523 tcttgagtgtggttcaattcccttttgagattgttgcggtcaataccattctgcattatt 582
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9181 tcttgagtgt-gttcaaatcccttttgagattgttgcggtcaataccattctgcattatt 9123
Query: 583 ggaaagaatgatttctttccagctttccctttattggtccaagttcggctttttattgga 642
||| || ||||||||| ||||||| |||| |||| || ||||||| ||||| ||||||
Sbjct: 9122 ggagag-atgatttctctccagctatcccattatgtgtacaagttctgctttatattgg- 9065
Query: 643 aatttcgttattcgca 658
||| ||||||||||||
Sbjct: 9064 aatatcgttattcgca 9049
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7722
Number of Sequences: 1807
Number of extensions: 7722
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)