BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF11RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1703 1289 0.0
>3x_Contig1703
Length = 17919
Score = 1289 bits (650), Expect = 0.0
Identities = 759/782 (97%), Gaps = 10/782 (1%)
Strand = Plus / Minus
Query: 54 ggtagtcctccaaatgctatggcgcaaagacaaaatataccaattcaaaagaccgctgca 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14899 ggtagtcctccaaatgctatggcgcaaagacaaaatataccaattcaaaagaccgctgca 14840
Query: 114 actactgcaactgcaacaaacgcaaacccgagctcagcagctgccgcaccaaataacaca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14839 actactgcaactgcaacaaacgcaaacccgagctcagcagctgccgcaccaaataacaca 14780
Query: 174 gcttctgacaaatcgtccccaatgcaggtgacaacggtgaatgcatttgcaaatcaaaca 233
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 14779 gcttctgacaaatcgtccccaatgcaggtgacaacggtgaatgcagctgcaaatcaaaca 14720
Query: 234 gcacaaagcaatacaagaccaccaatcttcaagcaaccaaacccatcgataccaataagt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14719 gcacaaagcaatacaagaccaccaatcttcaagcaaccaaacccatcgataccaataagt 14660
Query: 294 gaaaatgtcaccgcatccccaacagtttcagtgtcatacagaagcaacagacctacgata 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14659 gaaaatgtcaccgcatccccaacagtttcagtgtcatacagaagcaacagacctacgata 14600
Query: 354 acaggcggtagtggtatgaacgcgccagcgctaactacacctgttatgaccaaactaccg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14599 acaggcggtagtggtatgaacgcgccagcgctaactacacctgttatgaccaaactaccg 14540
Query: 414 ccatatgaggtcgatactgagcgtgtgatgtctaaaagaaagctccgtgaactcgtcaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14539 ccatatgaggtcgatactgagcgtgtgatgtctaaaagaaagctccgtgaactcgtcaaa 14480
Query: 474 acggtgggtatagacgaaggtgatggtgaaaccaccattgatggtgatgtggaagagcta 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14479 acggtgggtatagacgaaggtgatggtgaaaccaccattgatggtgatgtggaagagcta 14420
Query: 534 ttactcgatctagcagacgatttcattactaatgttacgaatttcgcctggtaattgggc 593
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 14419 ttactcgatctagcagacgatttcattactaatgttacgaatttcgcctgtaaattggca 14360
Query: 594 aaacatagaatatccgattcactcgacgtaagagacatccaaatgcatctggaacgttat 653
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 14359 aaacatagaaaatccgattcactcgacgtaagagacatccaaatgcatctggaacgtaat 14300
Query: 654 tgg-atatcagaatcccagggtttgccaacgatgaaatccgta-caccaagaaatggaat 711
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14299 tggaatatcagaatcccagggtttgccaacgatgaaatccgtagcaccaagaaatggaat 14240
Query: 712 ccaacccc-tcgtac-atcaaatgggaaatgc-atcaattacaat-aaactgcccgtacc 767
|||||||| |||||| ||||||||| |||||| |||||| ||||| ||||||| |||||
Sbjct: 14239 ccaaccccttcgtacaatcaaatggtaaatgcaatcaataacaataaaactgcacgtaca 14180
Query: 768 catcccg-aaagaagtgaaatggat-aattacccctgttt-aacaagttc-ttcattcaa 823
||||||| ||||||||||||||||| ||||||| |||||| ||||||||| |||||||||
Sbjct: 14179 catcccgaaaagaagtgaaatggataaattaccactgtttaaacaagttcattcattcaa 14120
Query: 824 ac 825
||
Sbjct: 14119 ac 14118
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5747
Number of Sequences: 1807
Number of extensions: 5747
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)