BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF12FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1544 1425 0.0
>3x_Contig1544
Length = 10626
Score = 1425 bits (719), Expect = 0.0
Identities = 831/861 (96%), Gaps = 6/861 (0%)
Strand = Plus / Minus
Query: 92 ctgtcactgtgtgcgtatcctttatttgttccgtttaatcaaggtataaaaaagaattat 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4088 ctgtcactgtgtgcgtatcctttatttgttccgtttaatcaaggtataaaaaagaattat 4029
Query: 152 ggaagggactccgaagagacaaagagccggctcactgctgggtgaagagtctccagagac 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4028 ggaagggactccgaagagacaaagagccggctcactgctgggtgaagagtctccagagac 3969
Query: 212 tccttcaccgttgattgacagtaataaaaatgattccgggtccaggcctatttttttgcc 271
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3968 tccttcaccgttgagtgacagtaataaaaatgattccgggtccaggcctagttttttgcc 3909
Query: 272 ctcgccgagacaatcttcggcaactgtgggaaatctcgagggggcgccctctctggcaag 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 ctcgccgagacaatcttcggcaactgtgggaaatctcgagggggcgccctctctggcaag 3849
Query: 332 tccaaaaagattcactcactcatcacactctggagagatcgccataccgcaatcaccggt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 tccaaaaagattcactcactcatcacactctggagagatcgccataccgcaatcaccggt 3789
Query: 392 aggtttacaacattcaaagtttaccaatctgataccacctgaaactcccaagtcaaaaaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788 aggtttacaacattcaaagtttaccaatctgataccacctgaaactcccaagtcaaaaaa 3729
Query: 452 ccaggatctgtttctttcgccatcgctagagttgcaaagtcctgttcataaacctgttgt 511
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 ccaggagctgtttctttcgccatcgctagagttgcaaagtcctgttcataaacctgttgt 3669
Query: 512 tgcgactcataaaccgatacgtgaaatttcgaataaccttaaatcaaggttaaattatgc 571
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 tgcgactcagaaaccgatacgtgaaatttcgaataaccttaaatcaaggttaaattatgc 3609
Query: 572 atacgtcaagatgcaacagaatatgcttcagcattcgaaacgcgggttagatgaatcgat 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 atacgtcaagatgcaacagaatatgcttcagcattcgaaacgcgggttagatgaatcgat 3549
Query: 632 tgacgatgctgctcaagtgacaaacgatgtgatacctagttcttatagcaacgttttcgc 691
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 3548 tgacgatgctgctcaagtgacaaacgaggtgaaacctagttcttatagcaacgttttcgc 3489
Query: 692 tcatgattcagatacggaactggatacactttcttctgccattaaagaaacgatgaatgc 751
||| |||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||
Sbjct: 3488 tcaggattcagatacggaactggaaacacttccttctgccattaaggaaacgagaaatgc 3429
Query: 752 atcatagtccgtattggcacacgatacgatggggttgaaactaaaggatga-ttagaaga 810
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3428 atcaaagtccgtattggcacacgatacgatggggttgaaactaaaggatgatttagaaga 3369
Query: 811 tttagccggtgag-attctgcgcnagtagcgttcttgaaagcgtnacaaagttccaag-a 868
||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||| |
Sbjct: 3368 tttagccggtgagaattctgcgcaggtagcgttcttgaaagcgttacaaagtcccaagaa 3309
Query: 869 aaaacaaaggttcgtatcctc-acccctccaaaga-tactagaacatcatcggcgtcaaa 926
||||||||||| ||||||| |||| |||||||| |||||||||||||||| |||||||
Sbjct: 3308 aaaacaaaggtcgttatcctcaacccatccaaagattactagaacatcatcgtcgtcaaa 3249
Query: 927 tgcgc-accctcagaggtgga 946
| ||| ||| |||||||||||
Sbjct: 3248 ttcgcaaccatcagaggtgga 3228
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5384
Number of Sequences: 1807
Number of extensions: 5384
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)