BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZF12RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1124 0.0
>3x_Contig1794
Length = 36744
Score = 1124 bits (567), Expect = 0.0
Identities = 751/789 (95%), Gaps = 19/789 (2%)
Strand = Plus / Plus
Query: 46 ctttcagtcttaa-tatgtcctttca-gaatgtcatgctctccaaaaggcaacatacctt 103
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 33253 ctttcagtcttaaatatgtcctttcaagaatgtc-tgctctccaaaaggcaacatacctt 33311
Query: 104 tttatcagctgtagggaggtcgttggtaagtgccatcagagtttcaagggtctaagtacg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33312 tttatcagctgtagggaggtcgttggtaagtgccatcagagtttcaagggtctaagtacg 33371
Query: 164 gttgtctagtttattgcaggttgcaggtacaggatttaagccagaagaaagtcattttta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 33372 gttgtctagtttattgcaggttgcaggtacaggatttaagccagaagaaagtcatcttca 33431
Query: 224 aatttattacttgtttattctaatcttttcgagggtttttcagtttaaatcgaacaattg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33432 aatttattacttgtttattctaatcttttcgagggtttttcagtttaaatcgaacaattg 33491
Query: 284 ttttcgaaaaagcgcaactcaaaggggagactctattttctttccaactccctaggtaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33492 ttttcgaaaaagcgcaactcaaaggggagactctattttctttccaactccctaggtaat 33551
Query: 344 agctgaccgtagtttctggttctgaactgaaatcaaaagatgtcttttgacctgagtccg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33552 agctgaccgtagtttctggttctgaactgaaatcaaaagatgtcttttgacctgagtccg 33611
Query: 404 gtaatgtcaccagtgtttccttcggatattcatttgggaataccgaaggacgctactcct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33612 gtaatgtcaccagtgtttccttcggatattcatttgggaataccgaaggacgctactcct 33671
Query: 464 ttagcgaaatcaagttctttccaagtatacattcaacttgctgagcctataatctttttg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33672 ttagcgaaatcaagttctttccaagtatacattcaacttgctgagcctataatctttttg 33731
Query: 524 caagggtttagtccgactcattgggagggaagaccacctgctatactaagatgatcgttg 583
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 33732 caagggtttagtccgactcattgggagggaagaccacctgctatactaagaggatcgttg 33791
Query: 584 attcttcgagtcttataatctacanaattgaaatctatt-atttaacgttc-aaggtacg 641
||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 33792 attcttcgagtcttaaaatctacaaaattgaaatctattaatttaacgttcaaaggtacg 33851
Query: 642 t-aaagacagaat-gcctgaaagttttc--acaaag-agcaag-atttggagagct-aat 694
| ||||||||||| ||||||| || ||| ||||| |||||| ||||| |||||| |||
Sbjct: 33852 tcaaagacagaatggcctgaaggtattccaccaaagaagcaagaatttgtagagctcaat 33911
Query: 695 gatgttgtg-aacatacctggcctttttttcaaa-cgatttgc-aagtgttcc-aattac 750
||||||||| ||||||| ||||||||||| |||| |||||||| ||||||||| ||| ||
Sbjct: 33912 gatgttgtgaaacatacgtggccttttttccaaagcgatttgcaaagtgttccaaataac 33971
Query: 751 cagtcaaca-aacctgctggtttactg-aagggatgaccccttcgttattca-gcctttg 807
||||||||| | ||||||| ||||||| |||||| | | |||||||||||| |||||||
Sbjct: 33972 cagtcaacagagcctgctgatttactgaaagggagtaacgcttcgttattcaggcctttg 34031
Query: 808 cccgatgat 816
| |||||||
Sbjct: 34032 cacgatgat 34040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7313
Number of Sequences: 1807
Number of extensions: 7313
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)