BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZG02FM1.SCF screened BAC_end
         (915 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1452                                                        1467   0.0  

>3x_Contig1452 
          Length = 10057

 Score = 1467 bits (740), Expect = 0.0
 Identities = 806/820 (98%), Gaps = 8/820 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   taaggttgaattccagagttgtcttgtgcatttttaaattttcaagtgcaattcgataag 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 taaggttgaattccagagttgtcttgtgcatttttaaattttcaagtgcaattcgataag 1610

                                                                        
Query: 146  actcttcagagtcacgtaactcctcgtcgtatgtgtcaatttcaacttcatctggtaaag 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 actcttcagagtcacgtaactcctcgtcgtatgtgtcaatttcaacttcatctggtaaag 1550

                                                                        
Query: 206  actccttgagtctagattcaattgaagtgatattggactctatttcatagatttgctcct 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 actccttgagtctagattcaattgaagtgatattggactctatttcatagatttgctcct 1490

                                                                        
Query: 266  ctataccttggagttgattctcgtattgtatgaactcctttgtggctatgtcactatcgt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 ctataccttggagttgattctcgtattgtatgaactcctttgtggctatgtcactatcgt 1430

                                                                        
Query: 326  tttttatcttttttaggtccactctttttttgtctaaaatagaattgaattgagagagca 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 tttttatcttttttaggtccactctttttttgtctaaaatagaattgaattgagagagca 1370

                                                                        
Query: 386  aatcgccttccaaattaaaagatacgctaactaaattggctccctcttcaagctgcttct 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 aatcgccttccaaattaaaagatacgctaactaaattggctccctcttcaagctgcttct 1310

                                                                        
Query: 446  tgatggtttcaacatctttttttttcgtactttctgaagctttcaaaagggacaatttgg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 tgatggtttcaacatctttttttttcgtactttctgaagctttcaaaagggacaatttgg 1250

                                                                        
Query: 506  catataagtcggagtgctgatttgctttggttatttgttgttggataacttctagttcat 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 catataagtcggagtgctgatttgctttggttatttgttgttggataacttctagttcat 1190

                                                                        
Query: 566  cttctaacgaaagaatatcttgattcttcgtttttatagaggtagaaatcgcatcaacaa 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 cttctaacgaaagaatatcttgattcttcgtttttatagaggtagaaatcgcatcaacaa 1130

                                                                        
Query: 626  ttctctcagtattccactgcttcaatttagactcgtaattgttcagagcttctttttcga 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 ttctctcagtattccactgcttcaatttagactcgtaattgttcagagcttctttttcga 1070

                                                                        
Query: 686  cttttaaatctttttcactaaccctcttatcatttaatcgattcctttagc-ttttggtc 744
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1069 cttttaaatctttttcactaaccctcttatcatttaatcgattcc-ttagctttttggtc 1011

                                                                        
Query: 745  tggtccgccagcttattcaaatcgcttgaaatatatgacaattgctgttccttttttcgc 804
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1010 tggtccgccagcttattcaaatcgcttgaaatatatgacaattgctgttcc-tttttcgc 952

                                                                        
Query: 805  aaacgaattncgtaaaactgataatttctcctcccaatgtagttncttccgaaatgttgt 864
            ||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||| |||
Sbjct: 951  aaacgaatttcgtaaaactgataatttctcct-ccaatgtagtttctt-cgaaatggtgt 894

                                                    
Query: 865  ttggnncaagcagctttncaaggttctttattggctgtat 904
            ||||  |||||||  || |||||||| |||||||||||||
Sbjct: 893  ttgg--caagcaggctttcaaggttc-ttattggctgtat 857


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7788
Number of Sequences: 1807
Number of extensions: 7788
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)