BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG02RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 1469 0.0
>3x_Contig1041
Length = 5356
Score = 1469 bits (741), Expect = 0.0
Identities = 786/796 (98%), Gaps = 5/796 (0%)
Strand = Plus / Plus
Query: 50 cgatatggtcgacgacatagtgcgaaaaattatttgaagatcacatctcaaattctatta 109
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3346 cgatatggtcgacgacatag-gcgaaaaattatttgaagatcacatctcaaattctatta 3404
Query: 110 aattgcccaaacggagggacacctcatatatccatgcggtatacaagaatccgccgataa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3405 aattgcccaaacggagggacacctcatatatccatgcggtatacaagaatccgccgataa 3464
Query: 170 ctgaggaagaatacacaaattcaatgcctgacctaagagcaaggtcatcttcttctgcat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3465 ctgaggaagaatacacaaattcaatgcctgacctaagagcaaggtcatcttcttctgcat 3524
Query: 230 caatgccggatctgtcggcaaaaaagtccatggatgcaataagagaaactacaacaaatc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3525 caatgccggatctgtcggcaaaaaagtccatggatgcaataagagaaactacaacaaatc 3584
Query: 290 cttcttcctataatgaatccaaacgtcaaatgatcgacgtcacgcacctttccacaacaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3585 cttcttcctataatgaatccaaacgtcaaatgatcgacgtcacgcacctttccacaacaa 3644
Query: 350 aaaaaattaaattattgaaagtgaactacttccattgttgtacgcagttcgccatagcac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3645 aaaaaattaaattattgaaagtgaactacttccattgttgtacgcagttcgccatagcac 3704
Query: 410 ttgaatcgatttcgcaaagattagcacaagttcctcctgaagccagactcagtgctttga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3705 ttgaatcgatttcgcaaagattagcacaagttcctcctgaagccagactcagtgctttga 3764
Query: 470 gagcagaattgtccatcttaaaccgtgatttgccagccgaagttgatattcctgaactat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3765 gagcagaattgtccatcttaaaccgtgatttgccagccgaagttgatattcctgaactat 3824
Query: 530 tgccagttaataaaaagggcaaactacataaacttatcaagatttcagcaaatgaagctc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3825 tgccagttaataaaaagggcaaactacataaacttatcaagatttcagcaaatgaagctc 3884
Query: 590 aagtgttaaattctgcagaaaaagttccatatttactattcatcgagtttctcaaagatg 649
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3885 aggtgttaaattctgcagaaaaagttccatatttactattcatcgagtttctcaaagatg 3944
Query: 650 acttcgattttgatccaacgtctgaacaaaatatcaaactactggaaaacaaccctcgta 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3945 acttcgattttgatccaacgtctgaacaaaatatcaaactactggaaaacaaccctcgta 4004
Query: 710 gctcttatatctttgatttaagctacgtgaaacagaataacgcacctttttaagctaaca 769
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4005 gctcttatatctttgatttaagctacgtgaaacagaataacgcaccttttaaagctaaca 4064
Query: 770 tgccactagaaacatcattccggatcgggccatcaagaaaatgggatcttgcggatgttt 829
||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||||
Sbjct: 4065 tgccactagaaacatca-tccggatcggccaatcaagaaa--tggatcttgcggatgttt 4121
Query: 830 ncaatggttaaattaa 845
|||||||||||||||
Sbjct: 4122 -caatggttaaattaa 4136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6856
Number of Sequences: 1807
Number of extensions: 6856
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)