BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG03FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1515 0.0
>3x_Contig1061
Length = 4663
Score = 1515 bits (764), Expect = 0.0
Identities = 854/877 (97%), Gaps = 6/877 (0%)
Strand = Plus / Minus
Query: 85 aacgaaatattacacggaaacaaattgcaaaccaaaaaacagtcatctattctcagtaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3236 aacgaaatattacacggaaacaaattgcaaaccaaaaaacagtcatctattctcagtaaa 3177
Query: 145 ttagcgcatgccacaatctcagacgcagcaagggccaatg-aatttctacttaaattcaa 203
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3176 ttagcgcatgccacaatctcagacgcagcaagggccaatgcaatttctacttaaattcaa 3117
Query: 204 tgccgttaagctaaagatgttagaaccggtctctgacactgtacagaagaagtctttcca 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3116 tgccgttaagctaaagatgttagaaccggtctctgacactgtacagaagaagtctttcca 3057
Query: 264 tacgaacgctgggagtatcagagggaacaaatacagggtttcagtgacggagtccaaaaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3056 tacgaacgctgggagtatcagagggaacaaatacagggtttcagtgacggagtccaaaaa 2997
Query: 324 cagggttgacccccttaaagaaagtctttcattcatttcagatccttctaagttcgatga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2996 cagggttgacccccttaaagaaagtctttcattcatttcagatccttctaagttcgatga 2937
Query: 384 atcacagattaaacacccagccgatcttcctattcccatacagacaataagtactgaaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2936 atcacagattaaacacccagccgatcttcctattcccatacagacaataagtactgaaga 2877
Query: 444 taaccctccaactgacaccaccataacaaatataaccgaaactatatcaaaccaaggaca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2876 taaccctccaactgacaccaccataacaaatataaccgaaactatatcaaaccaaggaca 2817
Query: 504 aactagtgtcacttccgattctaatagcattaaaaattcgttgaagcgtggaatagacag 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2816 aactagtgtcacttccgattctaatagcattaaaaattcgttgaagcgtggaatagacag 2757
Query: 564 cgttcccggcccttcgtctactatccaccaagctcagatgaaaaagatattatcgtttgc 623
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2756 cgttcccggcccttcgtctactatccaccaagctcagatgaaaaagaaattatcgtttgc 2697
Query: 624 tgattataagaaaaaaatcaaacctgcttaacggatgacttccttggtatcgaaaccttc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2696 tgattataagaaaaaaatcaaacctgcttaacggatgacttccttggtatcgaaaccttc 2637
Query: 684 attagcacgcaaacttttttttcagttcggaatgtaccctata-gtagtcagcggtggta 742
|||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct: 2636 attagcacgcaaacttttttttcagttcgggatgta-cctataggtagtcagcggtggta 2578
Query: 743 ataaacagggagagtgtacttaacaatttagcctncttctcataaaatgaactttttttt 802
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2577 ataaacggggagagtgtacttaacaatttagcctccttctcataaaatgaactttttttt 2518
Query: 803 gcgagttatttagaattttgnacagtggtttcgatttgctttatcgatatatgtgggaaa 862
||||||||||||| | |||| || |||| ||||||||||||||||||||||||| |||||
Sbjct: 2517 gcgagttatttaggaatttggacggtgggttcgatttgctttatcgatatatgttggaaa 2458
Query: 863 acta-nccatacttttctattatttatttacatggttaataataaacc-agaactgacta 920
|||| | ||||||||||||||||||||||||| ||| ||||| |||| |||||||||||
Sbjct: 2457 actagtctatacttttctattatttatttacattgtttataattaaccaagaactgacta 2398
Query: 921 cttcttaggtattctct-aaaaaatcgtatttgcctt 956
||||||||||||||||| | |||| ||||||||||||
Sbjct: 2397 cttcttaggtattctctcagaaaagcgtatttgcctt 2361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6629
Number of Sequences: 1807
Number of extensions: 6629
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)