BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG03RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1316 0.0
>3x_Contig1699
Length = 18038
Score = 1316 bits (664), Expect = 0.0
Identities = 779/799 (97%), Gaps = 15/799 (1%)
Strand = Plus / Plus
Query: 49 gcttataataagatatcaacagatttcctcgtggaggaaaagactacatatatatataca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1974 gcttataataagatatcaacagatttcctcgtggaggaaaagactacatatatatataca 2033
Query: 109 tatgtatcatgatcatcaaaatttgaagatgatgaatcgtctcacatgtcaatgcgatga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2034 tatgtatcatgatcatcaaaatttgaagatgatgaatcgtctcacatgtcaatgcgatga 2093
Query: 169 actgcaattagtggtgtgaatctagaagaacagatggacaatacactgactagccctctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 actgcaattagtggtgtgaatctagaagaacagatggacaatacactgactagccctctt 2153
Query: 229 ttaaggtttgaagcaattgacaagaattaaaatcggcttaaaggtggaatatcaatatca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2154 ttaaggtttgaagcaattgacaagaattaaaatcggcttaaaggtggaatatcaatatca 2213
Query: 289 atagttacatcgccaattttgaaatgaagaagaagcgaaaacattagctatattcatgtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 atagttacatcgccaattttgaaatgaagaagaagcgaaaacattagctatattcatgtt 2273
Query: 349 agtctttcccctcatttttctcccgaagtaaaccgttactgcattattatcctggtattc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 agtctttcccctcatttttctcccgaagtaaaccgttactgcattattatcctggtattc 2333
Query: 409 tattccgtcttaacgtaagtaagtgtagtttgttattttataagatcacataataataca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 tattccgtcttaacgtaagtaagtgtagtttgttattttataagatcacataataataca 2393
Query: 469 actgcttcctttatcctgagggatggtatcattcgccccctttggagttgcagtcaatgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 actgcttcctttatcctgagggatggtatcattcgccccctttggagttgcagtcaatgc 2453
Query: 529 acaacgagcagcttcggtgaatgcctcgttgacacctctattcattttggcgctgcattc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 acaacgagcagcttcggtgaatgcctcgttgacacctctattcattttggcgctgcattc 2513
Query: 589 caagtagcgcaatgcaccgattttcttcgccatatccaaacctttcttcgt-actaatca 647
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 2514 caagtagcgcaatgcaccgattttcttcgccatatccaaacc-ttcttcgtaactaatca 2572
Query: 648 atccattatccttagcgttactattcctgttctgaatagagcctggggtaatggcagcag 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2573 atccattatccttagcgttactattcctgttctgaatagagcctggggtaatggcagcag 2632
Query: 708 atttcgtcccgaactctttc-aatttcttaaat-acatttt-acgctac-agtactaa-t 762
||| |||||||||||| | |||||||||||| ||||||| ||||||| |||||||| |
Sbjct: 2633 attcgttcccgaactcttccaaatttcttaaatcacattttaacgctacaagtactaatt 2692
Query: 763 tcacacc-tcac-atgatctgcga-ttcgccaacc--attattttg-acgttctcta-cg 815
||||||| |||| ||||||||||| |||||||||| |||||||| |||||||||| ||
Sbjct: 2693 tcacaccttcacaatgatctgcgatttcgccaacccatttattttgaacgttctctagcg 2752
Query: 816 agtcccttg-atctaccga 833
||||||||| |||||||||
Sbjct: 2753 agtcccttgaatctaccga 2771
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9317
Number of Sequences: 1807
Number of extensions: 9317
Number of successful extensions: 153
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)