BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG04RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1551 957 0.0
>3x_Contig1551
Length = 9073
Score = 957 bits (483), Expect = 0.0
Identities = 616/643 (95%), Gaps = 16/643 (2%)
Strand = Plus / Plus
Query: 47 actatcaatccatacaatgcattgtattctccccgtggtattatagataaatacatatta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 actatcaatccatacaatgcattgtattctccccgtggtattatagataaatacatatta 3137
Query: 107 cttgctttgtcaatattcaatccccttcaatgtagactcataagaattgttgtaatgcta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3138 cttgctttgtcaatattcaatccccttcaatgtagactcataagaattgttgtaatgcta 3197
Query: 167 taattattgggaattattaagcgacaaagtaaattatcttagaggattgcagattaataa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3198 taattattgggaattattaagcgacaaagtaaattatcttagaggattgcagattaataa 3257
Query: 227 gttttattataatttcacagcaaggaattgtttcagcactttagtccattaagctagata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3258 gttttattataatttcacagcaaggaattgtttcagcactttagtccattaagctagata 3317
Query: 287 actactatatataattttggaagagaataggaatcgaacttatgaagaacacagccattg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3318 actactatatataattttggaagagaataggaatcgaacttatgaagaacacagccattg 3377
Query: 347 agtttacagcaagtgattgtgaaagtagcttggtatattcggtatattaacangtaacaa 406
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3378 agtttacagcaagtgattgtgaaagtagcttggtatattcggtatattaacaagtaacaa 3437
Query: 407 aaaaaaaaacacacaatgaactagaatgtagctgattagcatgatactgtactttctgtg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3438 aaaaaaaaacacacaatgaactagaatgtagctgattagcatgatactgtactttctgtg 3497
Query: 467 atactaaatcaaatattactaatatctttgatgtatatcatttgattacagccnatttgc 526
|||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||
Sbjct: 3498 atactaaatcaaatattactaatatcttgaatgtatatcattgaattacagctta-ttgc 3556
Query: 527 cgaaagggattgaattctgtatttaaagggctgaaaaaaacataccttcgaaaaaaaaaa 586
|||||||||||||| |||||| | ||| ||||| |||||||||||| ||||||||||||
Sbjct: 3557 cgaaagggattgaa-tctgta-taaaaaggctg-aaaaaacatacc-tcgaaaaaaaaa- 3611
Query: 587 ttagcacggcctgataatataaacccgtaaatatactatttgaaagggcaangaaatttc 646
|||||||| ||||||||||||| |||||||||||||||| |||||||| ||||| ||
Sbjct: 3612 -tagcacgg-ctgataatataaa-ccgtaaatatactatt--gaagggcaa-gaaatatc 3665
Query: 647 aacaagccttgggcactgatacctgcatagaggataagatggc 689
||| |||||| |||||||||| ||||||||| |||||||||||
Sbjct: 3666 aac-agcctt-ggcactgata-ctgcataga-gataagatggc 3704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,970
Number of Sequences: 1807
Number of extensions: 13970
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)