BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG05FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1491 0.0
>3x_Contig1775
Length = 26320
Score = 1491 bits (752), Expect = 0.0
Identities = 798/811 (98%), Gaps = 2/811 (0%)
Strand = Plus / Plus
Query: 86 tagaagatggtgttatctgatcaatatctagatgagatcttagagatactgtagttatca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20779 tagaagatggtgttatctgatcaatatctagatgagatcttagagatactgtagttatca 20838
Query: 146 tgtgatggtttttgtggacatgagggacctactgtgtcttattaatccataaaagatcgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20839 tgtgatggtttttgtggacatgagggacctactgtgtcttattaatccataaaagatcgt 20898
Query: 206 aagttcctaatacattgggtactaaagtcatagcatcattattaattgataagttgctcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20899 aagttcctaatacattgggtactaaagtcatagcatcattattaattgataagttgctcg 20958
Query: 266 agtacatctcgaataggaaagtgaagtggtgggaagaataaatatctatgtctatatcta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20959 agtacatctcgaataggaaagtgaagtggtgggaagaataaatatctatgtctatatcta 21018
Query: 326 tatatgcatatatggttgtataatggtatcggtgataggaaggtaaatgcttttttttgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21019 tatatgcatatatggttgtataatggtatcggtgataggaaggtaaatgcttttttttgt 21078
Query: 386 tgttttttttttgtttatctatgttgcatattatcagctcgagttcatgcaaatctacag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21079 tgttttttttttgtttatctatgttgcatattatcagctcgagttcatgcaaatctacag 21138
Query: 446 tcacaccaacctttcaccacgtattgaatctccttggaattagcgttttttccaagggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21139 tcacaccaacctttcaccacgtattgaatctccttggaattagcgttttttccaagggaa 21198
Query: 506 attctgccacatggtttgaacatagttggttgtgacatttctggttgtgaccaatgtttc 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 21199 attctgccacatggtttgaacatagttggttgtgacatttctggttgtgaccaaggtttc 21258
Query: 566 acctcggagttcaatctcacgagtgacgtagtttcctttgtattttcatcttcttcgata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21259 acctcggagttcaatctcacgagtgacgtagtttcctttgtattttcatcttcttcgata 21318
Query: 626 tctgatgaagaagaatcacgtacagttgttgccttgacgaatttcaagtttgctggtgca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21319 tctgatgaagaagaatcacgtacagttgttgccttgacgaatttcaagtttgctggtgca 21378
Query: 686 tgctcaccgtgaagatctgtcctcgtaacctggcacatgtctgaccaaagcttctttctt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21379 tgctcaccgtgaagatctgtcctcgtaacctggcacatgtctgaccaaagcttctttctt 21438
Query: 746 ggtattagtgctaatttgatttgatgtggggatatcccgttggatggatctgctgggatg 805
| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct: 21439 gttattagtgctaatttgatttgatgtggtgatatcctgttggatggatctgctggaatg 21498
Query: 806 ttcaactganaaatttcttggatgaaaacccgttg-agaatggactcatttaagttgaag 864
||||||||| ||||||||||||| ||| |||||| ||||||||||||| ||||||| ||
Sbjct: 21499 ttcaactgagaaatttcttggattgaaagccgttgtagaatggactcatctaagttg-ag 21557
Query: 865 gtcaggcaataaatttttctggttcatacta 895
||||||||||||||||||||| |||||||||
Sbjct: 21558 gtcaggcaataaatttttctgtttcatacta 21588
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8146
Number of Sequences: 1807
Number of extensions: 8146
Number of successful extensions: 160
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)